Variant report

Variant	rs9675540
Chromosome Location	chr18:13421964-13421965
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr18:13420820..13426923-chr18:13539560..13544275,11	MCF-7	breast:
2	chr18:13412861..13415349-chr18:13419308..13422616,3	MCF-7	breast:
3	chr18:13414771..13422336-chr18:13423598..13429439,14	MCF-7	breast:
4	chr18:13215623..13223602-chr18:13421388..13431077,26	MCF-7	breast:
5	chr18:13246207..13249799-chr18:13421227..13425816,5	MCF-7	breast:
6	chr18:13420615..13423749-chr18:13538889..13542275,3	MCF-7	breast:
7	chr18:13223858..13225629-chr18:13420498..13422745,2	MCF-7	breast:
8	chr18:13421007..13423018-chr18:13543922..13545569,2	MCF-7	breast:
9	chr18:13420755..13423723-chr18:13423891..13427248,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000168675	Chromatin interaction
ENSG00000267239	Chromatin interaction
ENSG00000267690	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4239310	1.00[MEX][hapmap]
rs7244281	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13390400-13425600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr18:13395000-13426600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr18:13403400-13426400	Weak transcription	Brain Hippocampus Middle	brain
4	chr18:13407600-13427400	Weak transcription	Brain Substantia Nigra	brain
5	chr18:13411800-13422000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr18:13413200-13424400	Weak transcription	Fetal Brain Female	brain
7	chr18:13415000-13422400	Enhancers	Fetal Heart	heart
8	chr18:13417200-13427600	Weak transcription	Colon Smooth Muscle	Colon
9	chr18:13417200-13439400	Weak transcription	Fetal Stomach	stomach
10	chr18:13417200-13447200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr18:13417400-13422200	Weak transcription	Dnd41	blood
12	chr18:13417400-13426600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr18:13418200-13426800	Genic enhancers	Fetal Thymus	thymus
14	chr18:13418400-13422200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr18:13418400-13432000	Weak transcription	Pancreas	Pancrea
16	chr18:13418400-13452200	Weak transcription	Colonic Mucosa	Colon
17	chr18:13418600-13422400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr18:13418600-13422800	Weak transcription	Aorta	Aorta
19	chr18:13418600-13425400	Weak transcription	Psoas Muscle	Psoas
20	chr18:13418600-13427200	Weak transcription	Fetal Muscle Leg	muscle
21	chr18:13418800-13424600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr18:13419000-13422200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr18:13419000-13425400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr18:13419800-13422000	Enhancers	Left Ventricle	heart
25	chr18:13420000-13423000	Enhancers	Primary T cells from cord blood	blood
26	chr18:13420000-13426600	Weak transcription	Liver	Liver
27	chr18:13420400-13422000	Enhancers	Right Ventricle	heart
28	chr18:13420400-13423000	Enhancers	Primary T cells fromperipheralblood	blood
29	chr18:13420600-13422200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr18:13420600-13423000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr18:13420600-13423000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr18:13420600-13423000	Genic enhancers	Thymus	Thymus
33	chr18:13421000-13422800	Enhancers	Adipose Nuclei	Adipose
34	chr18:13421000-13423000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr18:13421200-13423000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr18:13421400-13422400	Weak transcription	Brain Anterior Caudate	brain
37	chr18:13421600-13422800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr18:13421600-13425200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr18:13421600-13425400	Weak transcription	Lung	lung
40	chr18:13421600-13426600	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr18:13421600-13435800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr18:13421600-13435800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr18:13421600-13437200	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr18:13421600-13446600	Weak transcription	Gastric	stomach
45	chr18:13421800-13422200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr18:13421800-13424600	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr18:13421800-13425000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr18:13421800-13425200	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr18:13421800-13425600	Weak transcription	Spleen	Spleen
50	chr18:13421800-13426400	Weak transcription	Right Atrium	heart

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