Variant report

Variant	rs9676035
Chromosome Location	chr18:14747784-14747785
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10468699	0.85[AMR][1000 genomes]
rs58069070	0.85[AMR][1000 genomes]
rs9676041	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9748864	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431972	chr18:13804043-14753900	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv428006	chr18:14087067-14874733	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv916419	chr18:14418522-15165372	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv909431	chr18:14524300-14751049	Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv2751771	chr18:14704694-15106727	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
6	nsv909433	chr18:14711974-14797570	Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2421993	chr18:14722006-14758540	Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1061152	chr18:14726146-14753435	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv9617	chr18:14736667-14748499	ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
10	nsv962498	chr18:14736804-14747929	ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
11	esv2756821	chr18:14741611-14865985	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:14746800-14748000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:14747400-14748000	Bivalent Enhancer	Right Ventricle	heart
3	chr18:14747400-14748200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
4	chr18:14747400-14748400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
5	chr18:14747400-14748600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr18:14747400-14748800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
7	chr18:14747400-14748800	ZNF genes & repeats	Pancreas	Pancrea
8	chr18:14747400-14749000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
9	chr18:14747600-14747800	Flanking Bivalent TSS/Enh	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr18:14747600-14747800	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
11	chr18:14747600-14748000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
12	chr18:14747600-14748000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
13	chr18:14747600-14748000	Flanking Active TSS	Osteobl	bone
14	chr18:14747600-14748200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
15	chr18:14747600-14748200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
16	chr18:14747600-14748200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr18:14747600-14748200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
18	chr18:14747600-14748400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr18:14747600-14748400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
20	chr18:14747600-14748400	ZNF genes & repeats	Gastric	stomach
21	chr18:14747600-14748600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
22	chr18:14747600-14748600	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr18:14747600-14748600	Active TSS	Muscle Satellite Cultured Cells	--
24	chr18:14747600-14748600	Active TSS	Brain Angular Gyrus	brain
25	chr18:14747600-14748600	Active TSS	Brain Anterior Caudate	brain
26	chr18:14747600-14748600	ZNF genes & repeats	Brain Germinal Matrix	brain
27	chr18:14747600-14748600	ZNF genes & repeats	Fetal Brain Female	brain
28	chr18:14747600-14748800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
29	chr18:14747600-14748800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr18:14747600-14748800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin

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