Variant report

Variant	rs9676853
Chromosome Location	chr19:39456888-39456889
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:39455670..39458151-chr19:39461139..39462812,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10402813	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10415953	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10416101	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11880780	0.82[ASN][1000 genomes]
rs7248334	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057899	chr19:39088319-39475493	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9676853	FBXO27	cis	Esophagus Mucosa	GTEx
rs9676853	CTB-189B5.3	cis	Esophagus Mucosa	GTEx

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39441000-39459200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr19:39441200-39459400	Weak transcription	Fetal Lung	lung
3	chr19:39441200-39465200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr19:39441200-39465200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr19:39441200-39465200	Weak transcription	NHLF	lung
6	chr19:39441200-39465400	Weak transcription	Right Atrium	heart
7	chr19:39441400-39462000	Weak transcription	Small Intestine	intestine
8	chr19:39441400-39465000	Weak transcription	HUVEC	blood vessel
9	chr19:39449800-39459000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr19:39450000-39465400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr19:39453200-39457000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr19:39453200-39457000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr19:39453200-39458200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr19:39453200-39458200	Weak transcription	Colon Smooth Muscle	Colon
15	chr19:39453200-39459000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr19:39453200-39459200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr19:39453200-39459400	Weak transcription	NHDF-Ad	bronchial
18	chr19:39453200-39465000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr19:39453200-39465000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr19:39453200-39465000	Weak transcription	K562	blood
21	chr19:39453200-39465200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr19:39453200-39465200	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr19:39453200-39465200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr19:39453200-39465200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr19:39453200-39465800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr19:39453200-39465800	Weak transcription	Pancreas	Pancrea
27	chr19:39453400-39457000	Weak transcription	Liver	Liver
28	chr19:39453400-39458200	Weak transcription	Fetal Kidney	kidney
29	chr19:39453400-39458200	Weak transcription	Ovary	ovary
30	chr19:39453400-39458400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr19:39453400-39459200	Strong transcription	Fetal Intestine Small	intestine
32	chr19:39453400-39459400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr19:39453400-39460600	Weak transcription	Adipose Nuclei	Adipose
34	chr19:39453400-39461200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr19:39453400-39464400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr19:39453400-39464800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr19:39453400-39464800	Weak transcription	Fetal Brain Male	brain
38	chr19:39453400-39464800	Weak transcription	Osteobl	bone
39	chr19:39453400-39465000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr19:39453400-39465000	Weak transcription	HMEC	breast
41	chr19:39453400-39465200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr19:39453400-39465200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr19:39453400-39465200	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr19:39453400-39465200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr19:39453400-39465200	Weak transcription	Aorta	Aorta
46	chr19:39453400-39465200	Weak transcription	Brain Angular Gyrus	brain
47	chr19:39453400-39465200	Weak transcription	HSMM	muscle
48	chr19:39453400-39465200	Weak transcription	NH-A	brain
49	chr19:39453400-39465200	Weak transcription	NHEK	skin
50	chr19:39453400-39465400	Weak transcription	Brain Anterior Caudate	brain

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