Variant report

Variant	rs967751
Chromosome Location	chr11:34858084-34858085
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs3763937	0.81[TSI][hapmap]
rs474636	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs497837	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs508324	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs519858	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6484746	0.81[TSI][hapmap]
rs7938962	0.81[TSI][hapmap]
rs7941930	0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs967751	LMO2	cis	lymphoblastoid	seeQTL
rs967751	APIP	cis	Skin Sun Exposed Lower leg	GTEx
rs967751	APIP	cis	Thyroid	GTEx
rs967751	CD44	cis	lymphoblastoid	seeQTL
rs967751	DEPDC7	cis	parietal	SCAN
rs967751	APIP	cis	lung	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34847200-34858400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:34852000-34858200	Weak transcription	HepG2	liver
3	chr11:34852600-34858400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:34853200-34858400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:34855800-34858600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:34858000-34859200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr11:34858000-34861200	Enhancers	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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