Variant report

Variant	rs9677805
Chromosome Location	chr2:64138092-64138093
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:64137390..64139134-chr2:64141328..64143487,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11886163	0.88[EUR][1000 genomes]
rs17028259	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4610042	0.86[EUR][1000 genomes]
rs58419731	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6704544	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6710437	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6727909	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6738024	0.81[EUR][1000 genomes]
rs6740299	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71393337	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72891054	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72891062	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7557394	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv531376	chr2:64094322-64521876	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv521717	chr2:64104132-64186582	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64114000-64212000	Weak transcription	Small Intestine	intestine
2	chr2:64114200-64174800	Weak transcription	Right Ventricle	heart
3	chr2:64116800-64138600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr2:64118200-64153600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:64119600-64139600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr2:64126200-64138800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr2:64127400-64138600	Weak transcription	Psoas Muscle	Psoas
8	chr2:64129600-64138200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr2:64129600-64138200	Weak transcription	NH-A	brain
10	chr2:64129600-64139000	Weak transcription	Spleen	Spleen
11	chr2:64129600-64153200	Weak transcription	Thymus	Thymus
12	chr2:64129600-64153600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr2:64129600-64153600	Weak transcription	Aorta	Aorta
14	chr2:64129600-64153600	Weak transcription	Pancreas	Pancrea
15	chr2:64129600-64154000	Weak transcription	Colonic Mucosa	Colon
16	chr2:64129600-64164000	Weak transcription	NHLF	lung
17	chr2:64129600-64201000	Weak transcription	Hela-S3	cervix
18	chr2:64129800-64154200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr2:64130000-64153200	Weak transcription	Gastric	stomach
20	chr2:64130000-64153600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr2:64130000-64153800	Weak transcription	Esophagus	oesophagus
22	chr2:64130200-64138200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr2:64130200-64149200	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr2:64130200-64153200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr2:64130200-64153600	Weak transcription	Fetal Intestine Small	intestine
26	chr2:64130200-64153600	Weak transcription	Ovary	ovary
27	chr2:64130200-64153800	Weak transcription	Fetal Stomach	stomach
28	chr2:64130400-64138400	Weak transcription	NHDF-Ad	bronchial
29	chr2:64130400-64138800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr2:64130400-64144400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr2:64130400-64155000	Strong transcription	HepG2	liver
32	chr2:64130400-64167600	Weak transcription	Fetal Heart	heart
33	chr2:64130400-64168400	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr2:64130400-64211200	Weak transcription	Fetal Brain Male	brain
35	chr2:64130600-64140800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr2:64130600-64144400	Weak transcription	HMEC	breast
37	chr2:64130600-64153600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr2:64130600-64168000	Weak transcription	Colon Smooth Muscle	Colon
39	chr2:64130800-64174800	Weak transcription	Stomach Mucosa	stomach
40	chr2:64131000-64138200	Weak transcription	NHEK	skin
41	chr2:64131000-64154200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr2:64131400-64155000	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr2:64131600-64141400	Strong transcription	Duodenum Mucosa	Duodenum
44	chr2:64132000-64154200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr2:64132200-64147600	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr2:64132600-64143800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr2:64132600-64147800	Strong transcription	Liver	Liver
48	chr2:64132800-64146000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr2:64132800-64147400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr2:64133200-64138200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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