Variant report

Variant	rs9678528
Chromosome Location	chr2:151060617-151060618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:151059823..151062781-chr2:151071614..151074024,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10170246	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10184785	0.81[ASN][1000 genomes]
rs10190277	0.83[ASN][1000 genomes]
rs10195650	0.82[ASN][1000 genomes]
rs10207680	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1031215	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1031216	0.81[ASN][1000 genomes]
rs10930038	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1155072	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11682154	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11687868	0.87[ASN][1000 genomes]
rs11886061	0.82[ASN][1000 genomes]
rs11886070	0.82[ASN][1000 genomes]
rs12692644	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12986816	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12996112	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13024074	0.84[ASN][1000 genomes]
rs13028397	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13419478	0.87[ASN][1000 genomes]
rs1374157	0.82[ASN][1000 genomes]
rs2376603	0.81[ASN][1000 genomes]
rs4260269	0.87[ASN][1000 genomes]
rs4283445	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4296450	0.82[ASN][1000 genomes]
rs4434022	0.82[ASN][1000 genomes]
rs4435478	0.81[ASN][1000 genomes]
rs4464296	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4481007	0.82[ASN][1000 genomes]
rs4560135	0.81[ASN][1000 genomes]
rs4597551	0.82[ASN][1000 genomes]
rs4597552	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4600677	0.82[ASN][1000 genomes]
rs4667341	0.83[ASN][1000 genomes]
rs4667343	0.82[ASN][1000 genomes]
rs62170020	0.82[ASN][1000 genomes]
rs6432680	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6432682	0.83[ASN][1000 genomes]
rs6432683	0.82[ASN][1000 genomes]
rs6650776	0.82[ASN][1000 genomes]
rs7564853	0.87[ASN][1000 genomes]
rs7566441	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7569176	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7575612	0.82[ASN][1000 genomes]
rs7581723	0.80[ASN][1000 genomes]
rs7586530	0.82[ASN][1000 genomes]
rs7592745	0.82[ASN][1000 genomes]
rs7600792	0.82[ASN][1000 genomes]
rs7604483	0.87[ASN][1000 genomes]
rs974902	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv469524	chr2:150927500-151076920	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv834412	chr2:151014270-151116638	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151055800-151064600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr2:151060000-151061000	Weak transcription	NHDF-Ad	bronchial
3	chr2:151060000-151061800	Enhancers	Osteobl	bone
4	chr2:151060000-151062000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:151060200-151060800	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:151060200-151061800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:151060200-151064600	Weak transcription	Fetal Brain Female	brain
8	chr2:151060400-151061600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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