Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17033106	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17033163	0.84[EUR][1000 genomes]
rs17033166	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs2141734	0.99[ASN][1000 genomes]
rs2861320	0.91[ASN][1000 genomes]
rs4671174	0.84[EUR][1000 genomes]
rs4671775	0.86[ASN][1000 genomes]
rs56058855	0.91[ASN][1000 genomes]
rs59472179	0.92[ASN][1000 genomes]
rs59852211	0.84[EUR][1000 genomes]
rs60700957	0.84[EUR][1000 genomes]
rs62145213	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62146280	0.84[EUR][1000 genomes]
rs62146281	0.84[EUR][1000 genomes]
rs62146282	0.84[EUR][1000 genomes]
rs6731187	1.00[ASN][1000 genomes]
rs6743774	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72809878	0.91[ASN][1000 genomes]
rs72809896	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72809900	0.99[ASN][1000 genomes]
rs72809902	0.83[EUR][1000 genomes]
rs72816015	0.83[EUR][1000 genomes]
rs7578984	0.90[ASN][1000 genomes]
rs7579373	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008584	chr2:67168244-67703601	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535775	chr2:67168244-67703601	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2759058	chr2:67266707-67465662	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2757805	chr2:67287279-67465662	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv428397	chr2:67287279-67465662	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67384600-67387200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr2:67385600-67388000	Enhancers	Colon Smooth Muscle	Colon
3	chr2:67385800-67388000	Enhancers	Rectal Smooth Muscle	rectum
4	chr2:67386600-67388000	Enhancers	HUVEC	blood vessel
5	chr2:67386800-67387200	Enhancers	Stomach Smooth Muscle	stomach
6	chr2:67387000-67387800	Enhancers	Pancreatic Islets	Pancreatic Islet

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