Variant report

Variant	rs9681865
Chromosome Location	chr3:51046977-51046978
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs4447760	0.83[AMR][1000 genomes]
rs61108141	0.81[AMR][1000 genomes]
rs6446243	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6446245	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6795573	0.83[AMR][1000 genomes]
rs7433217	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7614482	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7616183	0.82[AMR][1000 genomes]
rs7627266	0.81[AMR][1000 genomes]
rs9832952	0.81[AMR][1000 genomes]
rs9838433	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9877272	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51041000-51047000	Weak transcription	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links