Variant report

Variant	rs9681876
Chromosome Location	chr12:83627577-83627578
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10049288	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11508010	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11508695	0.86[EUR][1000 genomes]
rs11712237	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13319456	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28823407	0.81[EUR][1000 genomes]
rs28870458	0.81[EUR][1000 genomes]
rs4077931	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4356813	0.81[EUR][1000 genomes]
rs4467449	0.82[EUR][1000 genomes]
rs55911923	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57442844	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6777192	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73185875	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73185889	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73185892	0.81[EUR][1000 genomes]
rs73185897	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7651570	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9653914	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9653915	0.81[EUR][1000 genomes]
rs9814301	0.81[EUR][1000 genomes]
rs9815641	0.81[EUR][1000 genomes]
rs9831616	0.81[EUR][1000 genomes]
rs9832079	0.90[EUR][1000 genomes]
rs9832324	0.81[EUR][1000 genomes]
rs9850855	0.94[EUR][1000 genomes]
rs9859975	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9864071	0.81[EUR][1000 genomes]
rs9865644	0.81[EUR][1000 genomes]
rs9866152	0.82[EUR][1000 genomes]
rs9870250	0.90[EUR][1000 genomes]
rs9878229	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521849	chr12:83013783-83991479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv559559	chr12:83505512-83765069	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv899352	chr12:83556258-83671428	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv1046478	chr12:83603552-83669089	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1043439	chr12:83612917-83671726	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv510604	chr12:83614493-83679517	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv86	chr12:83615895-83632741	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv792	chr12:83615895-83632741	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv1050732	chr12:83616096-83672657	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv1047043	chr12:83616397-83672657	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv1039828	chr12:83620899-83671726	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
12	nsv1043435	chr12:83620899-83672657	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv1050466	chr12:83620899-83674900	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv1042674	chr12:83620899-83942628	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv498800	chr12:83621839-83628385	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:83627000-83628400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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