Variant report

Variant	rs9682174
Chromosome Location	chr3:157212540-157212541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:157211587..157213759-chr3:157215822..157218040,2	K562	blood:

Variant related genes	Relation type
ENSG00000197415	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1011060	0.82[CHB][hapmap]
rs12494965	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12496305	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12634385	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12634412	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12635273	0.82[CHB][hapmap]
rs1350149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1378801	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16827688	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16827707	0.92[YRI][hapmap]
rs16827716	0.95[YRI][hapmap]
rs16827747	0.95[CEU][hapmap];0.85[CHB][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2165873	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2316337	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2316348	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34316188	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4258914	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs4679797	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4680369	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4680371	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4680372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56877658	0.80[AFR][1000 genomes]
rs62278653	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62278654	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62278655	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62280977	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62280978	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62280979	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62280980	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62280981	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6441133	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67228252	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6779693	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs73158530	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157194600-157217000	Weak transcription	Pancreas	Pancrea
2	chr3:157210200-157214000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:157210400-157212800	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr3:157210600-157214000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:157210600-157217000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:157210800-157213800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr3:157211000-157213000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:157211000-157213200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:157211000-157216200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:157211200-157213200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:157211200-157213200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr3:157211200-157213400	Enhancers	Osteobl	bone
13	chr3:157211200-157214000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:157211400-157213200	Enhancers	HSMM	muscle
15	chr3:157211400-157213200	Genic enhancers	HUVEC	blood vessel
16	chr3:157211400-157213400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:157211600-157213200	Enhancers	NH-A	brain
18	chr3:157211600-157214200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:157211800-157212600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:157211800-157212800	Enhancers	NHLF	lung
21	chr3:157211800-157214600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr3:157212000-157212800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:157212000-157213200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr3:157212000-157213200	Enhancers	HSMMtube	muscle
25	chr3:157212000-157213800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr3:157212000-157214000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr3:157212000-157214200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr3:157212000-157216600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr3:157212200-157212600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr3:157212200-157213000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr3:157212200-157216200	Weak transcription	NHDF-Ad	bronchial
32	chr3:157212200-157217200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr3:157212400-157212600	Genic enhancers	Cortex derived primary cultured neurospheres	brain
34	chr3:157212400-157213200	Enhancers	Primary hematopoietic stem cells	blood
35	chr3:157212400-157213400	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr3:157212400-157214000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr3:157212400-157216200	Weak transcription	Fetal Kidney	kidney
38	chr3:157212400-157216200	Weak transcription	Fetal Lung	lung

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