Variant report

Variant	rs9682293
Chromosome Location	chr3:42343616-42343617
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:42328116..42330835-chr3:42342852..42344758,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs106114	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11129960	0.83[ASN][1000 genomes]
rs11714852	1.00[ASN][1000 genomes]
rs11714921	0.90[CHB][hapmap];0.80[JPT][hapmap];0.89[ASN][1000 genomes]
rs1266930	0.85[EUR][1000 genomes]
rs1349211	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1449365	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1449366	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1839307	1.00[ASN][1000 genomes]
rs1868524	0.98[EUR][1000 genomes]
rs474470	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs499475	1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs509298	0.85[EUR][1000 genomes]
rs524405	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55725165	0.99[EUR][1000 genomes]
rs566271	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs579380	0.80[CEU][hapmap]
rs613742	0.86[CEU][hapmap]
rs626563	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs627075	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs651689	0.82[CEU][hapmap];0.94[CHB][hapmap]
rs654623	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs678574	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9682123	0.99[ASN][1000 genomes]
rs9682135	1.00[ASN][1000 genomes]
rs9682282	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529987	chr3:41921995-42591771	Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv529988	chr3:41938089-42378111	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1009125	chr3:41953873-42472253	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv536549	chr3:41953873-42472253	Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv1005533	chr3:41953873-42596375	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv460521	chr3:42290088-42351803	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv590147	chr3:42290088-42351803	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv34472	chr3:42314655-42391480	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv590148	chr3:42331546-42356836	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv965099	chr3:42342600-42347640	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42343200-42346000	Enhancers	Primary B cells from peripheral blood	blood

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