Variant report

Variant	rs9686339
Chromosome Location	chr5:36116663-36116664
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36114529..36117143-chr5:36150539..36152194,3	K562	blood:
2	chr5:36114529..36117143-chr5:36150677..36152194,2	K562	blood:

Variant related genes	Relation type
ENSG00000145604	Chromatin interaction
ENSG00000164187	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10038967	1.00[ASW][hapmap];0.86[LWK][hapmap];0.87[MKK][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes]
rs10045632	1.00[AMR][1000 genomes]
rs10070454	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10071402	0.93[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13360562	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs267781	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs28625967	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6451259	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
3	nsv4795	chr5:36106115-36150407	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36096600-36128600	Weak transcription	Fetal Brain Male	brain
2	chr5:36099000-36116800	Weak transcription	Fetal Intestine Small	intestine
3	chr5:36100200-36127600	Weak transcription	Pancreas	Pancrea
4	chr5:36100200-36139400	Weak transcription	Gastric	stomach
5	chr5:36100800-36127600	Weak transcription	Spleen	Spleen
6	chr5:36101200-36150800	Weak transcription	Colonic Mucosa	Colon
7	chr5:36102000-36118400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr5:36102200-36118400	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr5:36102600-36129200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr5:36102600-36141400	Weak transcription	Hela-S3	cervix
11	chr5:36103000-36128000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr5:36103600-36118400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr5:36103600-36147200	Weak transcription	HUVEC	blood vessel
14	chr5:36103800-36117600	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr5:36103800-36118400	Strong transcription	Liver	Liver
16	chr5:36104000-36118400	Strong transcription	Primary B cells from peripheral blood	blood
17	chr5:36104000-36118600	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr5:36104800-36139400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:36105400-36128000	Weak transcription	Lung	lung
20	chr5:36105600-36125600	Weak transcription	Fetal Heart	heart
21	chr5:36105600-36142400	Weak transcription	NH-A	brain
22	chr5:36106200-36129200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr5:36106200-36139800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr5:36108200-36117000	Weak transcription	Small Intestine	intestine
25	chr5:36108200-36117200	Weak transcription	Thymus	Thymus
26	chr5:36108200-36122400	Weak transcription	GM12878-XiMat	blood
27	chr5:36108200-36126000	Weak transcription	Right Ventricle	heart
28	chr5:36108200-36127400	Weak transcription	HSMMtube	muscle
29	chr5:36108200-36127600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr5:36108200-36127600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr5:36108200-36127800	Weak transcription	Fetal Muscle Trunk	muscle
32	chr5:36108200-36129400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr5:36108200-36139000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr5:36108200-36139200	Weak transcription	Esophagus	oesophagus
35	chr5:36108200-36139400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr5:36108200-36139400	Weak transcription	Aorta	Aorta
37	chr5:36108400-36125800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr5:36108400-36139800	Weak transcription	Brain Substantia Nigra	brain
39	chr5:36108400-36150600	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr5:36108600-36123200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr5:36108600-36139800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr5:36108600-36142800	Weak transcription	Fetal Kidney	kidney
43	chr5:36108800-36127800	Weak transcription	Brain Germinal Matrix	brain
44	chr5:36108800-36134400	Weak transcription	Brain Cingulate Gyrus	brain
45	chr5:36109200-36127800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr5:36109400-36117200	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr5:36109400-36140000	Weak transcription	NHLF	lung
48	chr5:36110000-36118400	Strong transcription	Adipose Nuclei	Adipose
49	chr5:36110600-36118400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr5:36110800-36134800	Weak transcription	Brain Hippocampus Middle	brain

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