Variant report
| Variant | rs9687017 |
|---|---|
| Chromosome Location | chr5:50404831-50404832 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:50402647..50404980-chr5:50406854..50409062,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10064446 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs11950546 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11950673 | 0.86[EUR][1000 genomes] |
| rs13158168 | 0.85[EUR][1000 genomes] |
| rs13164520 | 0.83[EUR][1000 genomes] |
| rs13168660 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs13185352 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs13186088 | 0.92[EUR][1000 genomes] |
| rs17220801 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs17221836 | 0.85[EUR][1000 genomes] |
| rs17819579 | 0.86[EUR][1000 genomes] |
| rs17819597 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs34099504 | 0.92[EUR][1000 genomes] |
| rs34679693 | 0.92[EUR][1000 genomes] |
| rs35342167 | 0.89[EUR][1000 genomes] |
| rs4431303 | 0.83[EUR][1000 genomes] |
| rs4495131 | 0.92[EUR][1000 genomes] |
| rs5002924 | 0.93[EUR][1000 genomes] |
| rs67642424 | 0.92[EUR][1000 genomes] |
| rs72758286 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1034445 | chr5:49986171-50492609 | Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv830287 | chr5:50380059-50509674 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:50404800-50405000 | Flanking Active TSS | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
