Variant report

Variant	rs9687077
Chromosome Location	chr13:52916179-52916180
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1000082	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1000083	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10068664	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10463199	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10866776	0.98[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11135492	0.82[CEU][hapmap]
rs11135499	0.93[ASN][1000 genomes]
rs11950429	0.82[CEU][hapmap]
rs11953510	0.82[CEU][hapmap]
rs12109601	0.83[AMR][1000 genomes]
rs13158924	1.00[CEU][hapmap]
rs13163725	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13169233	0.83[EUR][1000 genomes]
rs1406325	0.93[ASN][1000 genomes]
rs1406326	0.96[ASN][1000 genomes]
rs1528592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1528594	0.93[ASN][1000 genomes]
rs1609326	0.96[ASN][1000 genomes]
rs1609327	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1830366	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1830368	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1830369	0.82[AFR][1000 genomes]
rs183410	0.86[ASN][1000 genomes]
rs1852739	0.96[ASN][1000 genomes]
rs1862592	0.93[ASN][1000 genomes]
rs1919244	0.93[ASN][1000 genomes]
rs1919245	0.93[ASN][1000 genomes]
rs1997296	0.93[ASN][1000 genomes]
rs2081139	0.93[ASN][1000 genomes]
rs2081140	0.93[ASN][1000 genomes]
rs2081142	0.93[ASN][1000 genomes]
rs2351504	0.86[ASN][1000 genomes]
rs2351506	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2548412	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2548423	0.93[ASN][1000 genomes]
rs2643465	0.96[ASN][1000 genomes]
rs2643496	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2643503	0.96[ASN][1000 genomes]
rs2643577	0.96[ASN][1000 genomes]
rs2697598	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2697637	0.96[ASN][1000 genomes]
rs291805	0.84[EUR][1000 genomes]
rs291822	0.82[CEU][hapmap]
rs3108540	0.93[ASN][1000 genomes]
rs317112	0.89[ASN][1000 genomes]
rs35887125	0.83[AMR][1000 genomes]
rs4869152	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4869153	0.93[ASN][1000 genomes]
rs4869156	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs6556953	0.89[ASN][1000 genomes]
rs6862780	0.83[AMR][1000 genomes]
rs6874040	0.93[ASN][1000 genomes]
rs6899065	0.93[ASN][1000 genomes]
rs71654364	0.83[EUR][1000 genomes]
rs7718270	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7721798	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7723203	0.93[ASN][1000 genomes]
rs9314193	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9686259	0.93[ASN][1000 genomes]
rs972717	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv428288	chr13:52728370-53068132	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv819887	chr13:52772113-52926921	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv900084	chr13:52835231-53119704	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv977243	chr13:52915464-52918841	Active TSS Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52913000-52918000	Weak transcription	HSMM	muscle
2	chr13:52913000-52918200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:52913400-52918200	Weak transcription	HepG2	liver
4	chr13:52913400-52918800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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