Variant report
| Variant | rs9688104 |
|---|---|
| Chromosome Location | chr5:43724000-43724001 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10050559 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10051788 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10054514 | 0.84[AFR][1000 genomes] |
| rs10055374 | 0.84[AFR][1000 genomes] |
| rs10473316 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13177579 | 0.80[AFR][1000 genomes] |
| rs13183238 | 0.86[AFR][1000 genomes] |
| rs13360905 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4380668 | 0.84[AFR][1000 genomes] |
| rs55912106 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58908791 | 1.00[EUR][1000 genomes] |
| rs62368578 | 0.84[AFR][1000 genomes] |
| rs6874715 | 1.00[EUR][1000 genomes] |
| rs6878821 | 0.84[AFR][1000 genomes] |
| rs6895383 | 0.80[AFR][1000 genomes] |
| rs6897781 | 1.00[EUR][1000 genomes] |
| rs71629192 | 0.84[AFR][1000 genomes] |
| rs73751786 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73751789 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73751792 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73751797 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73753604 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7709214 | 1.00[EUR][1000 genomes] |
| rs7718532 | 1.00[EUR][1000 genomes] |
| rs7733259 | 0.84[AFR][1000 genomes] |
| rs7736333 | 1.00[EUR][1000 genomes] |
| rs7736896 | 1.00[EUR][1000 genomes] |
| rs9292888 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv881017 | chr5:43444826-43731692 | Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 222 gene(s) | inside rSNPs | diseases |
| 2 | nsv881108 | chr5:43527432-43800333 | Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 57 gene(s) | inside rSNPs | diseases |
| 3 | esv3471542 | chr5:43665651-43824536 | Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| 4 | esv3471543 | chr5:43665767-43824443 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:43706000-43725000 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 2 | chr5:43723600-43726200 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
