Variant report

Variant	rs9688373
Chromosome Location	chr6:121253545-121253546
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12530110	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939908	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9285441	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9387908	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121252600-121253600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:121252800-121253600	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr6:121253000-121256200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:121253200-121253800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:121253200-121255600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:121253200-121260800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:121253400-121253600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:121253400-121253600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
9	chr6:121253400-121254000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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