Variant report

Variant	rs9689327
Chromosome Location	chr6:33944151-33944152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33934133..33938274-chr6:33943444..33948778,6	MCF-7	breast:
2	chr6:33942809..33944696-chr6:33949318..33951158,2	MCF-7	breast:
3	chr6:33935012..33937459-chr6:33942472..33944353,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs60799232	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73402458	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv5252	chr6:33919447-33955380	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
4	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
5	esv3485519	chr6:33937024-33944322	Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv885777	chr6:33942228-33997375	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv885778	chr6:33942228-34007054	Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33943200-33944200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:33943200-33944400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr6:33943400-33944200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:33943400-33944200	Bivalent Enhancer	Fetal Brain Male	brain
5	chr6:33943400-33944200	Bivalent/Poised TSS	Fetal Brain Female	brain
6	chr6:33943400-33944400	Bivalent Enhancer	Fetal Thymus	thymus
7	chr6:33943600-33944200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
8	chr6:33943600-33944200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:33943600-33944200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
10	chr6:33943600-33944200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
11	chr6:33943600-33944200	Bivalent Enhancer	Fetal Stomach	stomach
12	chr6:33943800-33944200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
13	chr6:33943800-33944200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
14	chr6:33943800-33944200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:33943800-33944200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:33943800-33944200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
17	chr6:33943800-33944200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
18	chr6:33943800-33944800	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:33944000-33944200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
20	chr6:33944000-33944200	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:33944000-33944200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:33944000-33944200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
23	chr6:33944000-33944200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
24	chr6:33944000-33944200	Bivalent Enhancer	Primary T cells from cord blood	blood
25	chr6:33944000-33944200	Enhancers	Primary hematopoietic stem cells	blood
26	chr6:33944000-33944200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
27	chr6:33944000-33944200	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
28	chr6:33944000-33944400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:33944000-33944400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
30	chr6:33944000-33944400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:33944000-33944400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:33944000-33944400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
33	chr6:33944000-33944800	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum

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