Variant report

Variant	rs9689808
Chromosome Location	chr6:142543625-142543626
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17071508	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17071523	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58575104	1.00[AMR][1000 genomes]
rs60805031	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7766609	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9688923	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830824	chr6:142361107-142544929	Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142496600-142546800	Weak transcription	NHLF	lung
2	chr6:142535000-142544400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:142535000-142544800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:142535000-142545000	Weak transcription	Esophagus	oesophagus
5	chr6:142535000-142545600	Weak transcription	Aorta	Aorta
6	chr6:142535000-142548800	Weak transcription	NH-A	brain
7	chr6:142535200-142544200	Weak transcription	Fetal Intestine Small	intestine
8	chr6:142535200-142545600	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:142535200-142546000	Weak transcription	Fetal Stomach	stomach
10	chr6:142535200-142548800	Weak transcription	Left Ventricle	heart
11	chr6:142535200-142552800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr6:142535400-142546800	Weak transcription	Fetal Intestine Large	intestine
13	chr6:142535600-142546200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr6:142535800-142553400	Weak transcription	Thymus	Thymus
15	chr6:142536000-142543800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr6:142536000-142544000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:142536000-142552800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr6:142536400-142543800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:142536400-142546600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:142539800-142546400	Weak transcription	Fetal Lung	lung
21	chr6:142540000-142544800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr6:142540000-142544800	Weak transcription	GM12878-XiMat	blood
23	chr6:142540200-142544200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr6:142540200-142544800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:142540200-142546400	Weak transcription	Osteobl	bone
26	chr6:142540200-142546600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:142540200-142548400	Weak transcription	Placenta	Placenta
28	chr6:142540800-142545200	Weak transcription	Adipose Nuclei	Adipose
29	chr6:142540800-142546400	Weak transcription	Liver	Liver
30	chr6:142541200-142544000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr6:142541200-142552800	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr6:142541200-142553200	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr6:142541200-142553400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr6:142541400-142544000	Weak transcription	Dnd41	blood
35	chr6:142541400-142544200	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr6:142541400-142544600	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr6:142541400-142545200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr6:142541400-142552800	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr6:142541600-142544000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:142541600-142544200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr6:142541600-142544600	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr6:142541600-142544600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr6:142541600-142545800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:142541600-142546600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr6:142541800-142543800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:142541800-142543800	Weak transcription	Duodenum Mucosa	Duodenum
47	chr6:142541800-142545000	Weak transcription	HSMM	muscle
48	chr6:142541800-142547000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr6:142541800-142550600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:142541800-142553200	Weak transcription	HepG2	liver

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