Variant report

Variant	rs9689941
Chromosome Location	chr6:15222741-15222742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15090118..15090992-chr6:15222224..15222852,2	MCF-7	breast:
2	chr6:15088434..15092772-chr6:15219565..15225354,13	MCF-7	breast:
3	chr6:15218874..15225564-chr6:15243422..15249789,18	MCF-7	breast:
4	chr6:15036577..15037681-chr6:15221695..15222858,47	MCF-7	breast:
5	chr6:14732703..14735058-chr6:15220960..15223796,2	MCF-7	breast:
6	chr6:14742305..14744752-chr6:15222484..15225143,3	MCF-7	breast:
7	chr6:15036618..15037814-chr6:15222040..15222792,3	MCF-7	breast:
8	chr6:15221003..15223875-chr6:15224055..15226661,2	K562	blood:
9	chr6:15065755..15066391-chr6:15221786..15222792,3	MCF-7	breast:
10	chr6:15221787..15224123-chr6:15242600..15245881,4	MCF-7	breast:
11	chr6:15220573..15223155-chr6:15261429..15263583,2	MCF-7	breast:
12	chr6:15036541..15037680-chr6:15221576..15222858,87	MCF-7	breast:
13	chr6:15086580..15087543-chr6:15222018..15222752,2	MCF-7	breast:
14	chr6:15089626..15091000-chr6:15221614..15222784,26	MCF-7	breast:
15	chr6:15089777..15091000-chr6:15221713..15222784,34	MCF-7	breast:
16	chr6:15063403..15067702-chr6:15220647..15223786,6	MCF-7	breast:
17	chr6:15089965..15090818-chr6:15221895..15222789,4	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000235488	Chromatin interaction
ENSG00000271888	Chromatin interaction
ENSG00000008083	Chromatin interaction
ENSG00000234261	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10456770	0.81[EUR][1000 genomes]
rs2327881	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6932550	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6940792	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9349972	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9464779	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15212000-15227600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:15219000-15223200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:15219200-15223800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:15219200-15224000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:15219400-15224000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:15219400-15224200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:15220600-15223000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr6:15220600-15223400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr6:15221200-15223200	Weak transcription	Primary B cells from cord blood	blood
10	chr6:15221400-15223200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:15222000-15222800	Enhancers	HepG2	liver
12	chr6:15222200-15222800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:15222200-15222800	Bivalent Enhancer	Fetal Muscle Leg	muscle
14	chr6:15222400-15227600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:15222600-15222800	Flanking Active TSS	Placenta	Placenta
16	chr6:15222600-15223200	Active TSS	A549	lung
17	chr6:15222600-15223800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:15222600-15224200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:15222600-15239400	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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