Variant report

Variant	rs9690171
Chromosome Location	chr7:108256128-108256129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11767037	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs17341955	0.82[EUR][1000 genomes]
rs17426638	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2215141	0.82[EUR][1000 genomes]
rs4298438	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55760662	0.83[EUR][1000 genomes]
rs58954269	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6466244	0.83[EUR][1000 genomes]
rs67940245	0.84[EUR][1000 genomes]
rs6945788	0.85[EUR][1000 genomes]
rs6951751	0.82[EUR][1000 genomes]
rs726608	0.84[EUR][1000 genomes]
rs7790890	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs975124	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9768342	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv275371	chr7:108250854-108257413	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108254200-108258000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr7:108254200-108258600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:108254600-108258600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:108255400-108258200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:108255400-108258200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr7:108255600-108258200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:108255600-108259800	Weak transcription	Fetal Brain Male	brain
8	chr7:108255800-108258000	Weak transcription	Liver	Liver
9	chr7:108255800-108258200	Weak transcription	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links