Variant report

Variant	rs9690781
Chromosome Location	chr7:5024177-5024178
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10269405	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11981905	0.83[CHB][hapmap]
rs12667431	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12702059	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2345223	0.80[EUR][1000 genomes]
rs28401649	0.91[ASN][1000 genomes]
rs28712306	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2942561	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2965031	0.92[CEU][hapmap];0.83[CHB][hapmap];0.80[EUR][1000 genomes]
rs3087733	0.88[ASN][1000 genomes]
rs4073329	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4615461	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55730323	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6945927	0.84[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6965043	0.96[CEU][hapmap];0.80[AMR][1000 genomes]
rs6977268	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7782681	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7782832	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7785875	0.90[ASN][1000 genomes]
rs7799275	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs907719	0.92[CEU][hapmap];0.83[CHB][hapmap]
rs9639892	0.90[ASN][1000 genomes]
rs9639895	0.94[ASN][1000 genomes]
rs9639898	0.93[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529538	chr7:4509189-5151503	Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv530968	chr7:4572250-5418004	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv1031697	chr7:4677463-5241790	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv538704	chr7:4677463-5241790	Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv8033	chr7:4802287-5086597	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv1022678	chr7:4810626-5113387	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv538705	chr7:4810626-5113387	Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	nsv1021170	chr7:4831361-5058033	Bivalent Enhancer Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv538706	chr7:4831361-5058033	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	nsv1033855	chr7:4862677-5069764	Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv869165	chr7:4889618-5799719	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	352 gene(s)	inside rSNPs	diseases
12	nsv1019120	chr7:4929653-5138409	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
13	nsv917078	chr7:4962123-5151633	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
14	nsv525289	chr7:5003373-5083741	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
15	nsv981425	chr7:5020769-5030325	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:5014600-5024400	Weak transcription	Small Intestine	intestine
2	chr7:5014600-5036200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:5014600-5041000	Weak transcription	Stomach Mucosa	stomach
4	chr7:5014800-5024400	Weak transcription	Colonic Mucosa	Colon
5	chr7:5014800-5026200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:5014800-5040000	Weak transcription	Right Atrium	heart
7	chr7:5014800-5041400	Weak transcription	Fetal Heart	heart
8	chr7:5015200-5024800	Weak transcription	Right Ventricle	heart
9	chr7:5015200-5031200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr7:5015600-5029000	Weak transcription	Psoas Muscle	Psoas
11	chr7:5015800-5039200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:5015800-5041800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:5016000-5038200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:5016000-5042000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:5016200-5038400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:5016200-5039000	Strong transcription	Liver	Liver
17	chr7:5016600-5040000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr7:5017000-5024600	Weak transcription	Aorta	Aorta
19	chr7:5017400-5024400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr7:5017600-5024600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr7:5017600-5024600	Weak transcription	Spleen	Spleen
22	chr7:5017600-5033200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:5017800-5045400	Weak transcription	Fetal Brain Male	brain
24	chr7:5018000-5024600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr7:5018000-5027800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr7:5018200-5024400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr7:5018200-5024400	Weak transcription	Brain Substantia Nigra	brain
28	chr7:5018200-5024400	Weak transcription	Left Ventricle	heart
29	chr7:5018200-5024600	Weak transcription	Fetal Brain Female	brain
30	chr7:5018200-5041800	Strong transcription	Dnd41	blood
31	chr7:5018400-5024600	Weak transcription	Brain Cingulate Gyrus	brain
32	chr7:5018400-5026400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr7:5018600-5024400	Weak transcription	HSMMtube	muscle
34	chr7:5018800-5024200	Weak transcription	Primary hematopoietic stem cells	blood
35	chr7:5018800-5024400	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr7:5018800-5024400	Weak transcription	Fetal Kidney	kidney
37	chr7:5018800-5024600	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr7:5018800-5024600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr7:5018800-5024600	Weak transcription	Pancreas	Pancrea
40	chr7:5018800-5024600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr7:5020600-5039000	Strong transcription	Muscle Satellite Cultured Cells	--
42	chr7:5020800-5024400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr7:5021000-5024400	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr7:5021000-5024400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr7:5021000-5024400	Weak transcription	Placenta	Placenta
46	chr7:5021000-5024400	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr7:5021200-5024400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr7:5021200-5024400	Weak transcription	Lung	lung
49	chr7:5021200-5024600	Weak transcription	Gastric	stomach
50	chr7:5021200-5024600	Weak transcription	Ovary	ovary

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