Variant report

Variant	rs9691336
Chromosome Location	chr7:98676111-98676112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:98676065..98678383-chr7:98685350..98688262,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10081297	0.81[LWK][hapmap];0.81[MKK][hapmap];0.94[YRI][hapmap]
rs10238845	0.83[YRI][hapmap]
rs10255856	0.90[LWK][hapmap];0.94[MKK][hapmap];0.94[YRI][hapmap];0.85[AMR][1000 genomes]
rs736624	0.88[MKK][hapmap]
rs7793210	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv1034506	chr7:98556216-98678440	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98650200-98681000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr7:98650400-98676600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:98653000-98690800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr7:98653600-98676600	Weak transcription	Spleen	Spleen
5	chr7:98654000-98676400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:98654000-98676600	Weak transcription	NHLF	lung
7	chr7:98654800-98690200	Weak transcription	Fetal Kidney	kidney
8	chr7:98655000-98676600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr7:98655000-98676800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr7:98655200-98676200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr7:98655200-98676600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr7:98655200-98676600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr7:98655200-98676600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr7:98655200-98676600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr7:98655200-98676600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr7:98655200-98676600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr7:98655200-98676600	Weak transcription	Thymus	Thymus
18	chr7:98655200-98676600	Weak transcription	A549	lung
19	chr7:98655200-98676600	Weak transcription	HSMM	muscle
20	chr7:98655200-98681000	Weak transcription	Hela-S3	cervix
21	chr7:98656400-98676800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr7:98656400-98685400	Weak transcription	HSMMtube	muscle
23	chr7:98656600-98676600	Weak transcription	HMEC	breast
24	chr7:98656600-98676800	Weak transcription	Fetal Lung	lung
25	chr7:98656600-98683400	Weak transcription	Fetal Intestine Large	intestine
26	chr7:98657800-98681000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr7:98658400-98676200	Weak transcription	Fetal Intestine Small	intestine
28	chr7:98658400-98676600	Weak transcription	Duodenum Mucosa	Duodenum
29	chr7:98658400-98676800	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr7:98658800-98684200	Weak transcription	Dnd41	blood
31	chr7:98659200-98684000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr7:98659600-98676200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr7:98665600-98676600	Weak transcription	Right Atrium	heart
34	chr7:98666000-98676400	Weak transcription	Aorta	Aorta
35	chr7:98666200-98676200	Weak transcription	Esophagus	oesophagus
36	chr7:98667000-98676200	Weak transcription	Brain Anterior Caudate	brain
37	chr7:98668200-98676200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr7:98668200-98676600	Weak transcription	NHDF-Ad	bronchial
39	chr7:98668400-98676200	Weak transcription	Psoas Muscle	Psoas
40	chr7:98668400-98676600	Weak transcription	Adipose Nuclei	Adipose
41	chr7:98668400-98676600	Weak transcription	Brain Substantia Nigra	brain
42	chr7:98668600-98676800	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr7:98668600-98684800	Weak transcription	Primary B cells from peripheral blood	blood
44	chr7:98669600-98676600	Weak transcription	Colon Smooth Muscle	Colon
45	chr7:98670200-98676200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr7:98670200-98676200	Weak transcription	Lung	lung
47	chr7:98670600-98676200	Weak transcription	Stomach Mucosa	stomach
48	chr7:98670600-98676800	Weak transcription	NH-A	brain
49	chr7:98670800-98676600	Weak transcription	Osteobl	bone
50	chr7:98670800-98680800	Weak transcription	Liver	Liver

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