Variant report

Variant	rs9692383
Chromosome Location	chr7:78972884-78972885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10231862	0.92[EUR][1000 genomes]
rs10256590	0.81[EUR][1000 genomes]
rs10953840	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17152303	0.87[ASN][1000 genomes]
rs17152321	0.86[ASN][1000 genomes]
rs17152348	0.86[ASN][1000 genomes]
rs17152357	0.86[ASN][1000 genomes]
rs17152361	0.86[ASN][1000 genomes]
rs4260838	0.87[EUR][1000 genomes]
rs4730769	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66650670	0.83[ASN][1000 genomes]
rs704865	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7804560	0.86[ASN][1000 genomes]
rs848904	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs848905	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs848906	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs848907	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs848908	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs848917	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs848918	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs848919	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs848920	0.82[EUR][1000 genomes]
rs848922	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs848923	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs848925	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs848927	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs848930	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs848936	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs848937	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs848939	0.82[EUR][1000 genomes]
rs848942	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs848943	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs848949	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs848952	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs848954	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs848955	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs848956	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs860247	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs991077	0.90[EUR][1000 genomes]
rs991260	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831041	chr7:78819499-78973222	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2764028	chr7:78874740-79112630	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv2762681	chr7:78958864-78982993	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78967600-78979600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:78967800-78975800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr7:78971800-78979200	Weak transcription	Brain Hippocampus Middle	brain
4	chr7:78971800-78981800	Weak transcription	Brain Angular Gyrus	brain

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