Variant report

Variant	rs9693258
Chromosome Location	chr8:121393706-121393707
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 150 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:147)

rs_ID	r²[population]
rs10085998	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10086229	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10086640	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10089714	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10090842	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10093792	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10095776	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs10095915	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10097612	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10099300	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10101562	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10102004	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10102834	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10103515	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10110599	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10110765	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10808512	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11534106	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11984927	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11985401	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12155569	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12155618	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12543724	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12544060	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12545343	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12546191	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12546382	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12547937	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12548210	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12548498	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12548577	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12548799	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12549257	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12549483	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12549554	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12550056	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12550724	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12675768	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12679289	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12681110	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13248193	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13248998	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13250411	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13250736	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13252848	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13255475	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13256253	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13258079	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13258768	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13258848	0.92[CEU][hapmap];0.95[CHB][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13261347	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13267496	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13268205	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13268539	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13269305	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13269329	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13269481	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13270125	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13272518	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13275217	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13278395	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13279029	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28415210	0.90[ASN][1000 genomes]
rs35648205	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3924784	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3924785	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4073756	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4128974	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4128975	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4128976	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4132023	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4132316	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4242314	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4256629	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4279642	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4285526	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4300045	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4310246	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4317615	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4379488	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4380980	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4409429	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4431630	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4469500	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4471090	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4486250	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4527922	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4537340	1.00[CHB][hapmap];0.83[JPT][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4545141	1.00[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4548223	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4573323	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4601362	1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4604482	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4634687	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4637891	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4644304	1.00[CHB][hapmap];0.83[JPT][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4644305	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4870731	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4871062	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56099013	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61675238	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6469923	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6469924	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6469925	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6469930	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6469932	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6469933	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6469934	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6650	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6980923	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6982091	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6987371	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6991421	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6991614	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7000801	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7001860	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7003420	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7004725	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7004954	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7005391	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7007857	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7009002	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7009779	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7015268	0.96[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7015843	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7016071	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7017154	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7461458	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7464523	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7464526	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7465620	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7814311	0.95[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7815522	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7819820	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7820316	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7822421	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7824600	1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs7842992	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7843061	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7843106	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7844850	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9297616	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9642849	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9642851	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9643145	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9643146	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9649950	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1033386	chr8:121369943-121501239	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121369600-121406200	Weak transcription	Left Ventricle	heart
2	chr8:121382800-121395400	Weak transcription	Aorta	Aorta
3	chr8:121386200-121395800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:121390400-121394000	Enhancers	Fetal Heart	heart
5	chr8:121391200-121395800	Weak transcription	Fetal Stomach	stomach
6	chr8:121391200-121406600	Weak transcription	NHLF	lung
7	chr8:121391400-121407000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr8:121392200-121402400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:121392400-121395800	Weak transcription	Osteobl	bone
10	chr8:121392800-121403000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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