Variant report

Variant	rs9696084
Chromosome Location	chr9:13901557-13901558
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10118960	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10125418	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10810057	1.00[CHB][hapmap]
rs1923352	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2382425	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7024597	1.00[ASN][1000 genomes]
rs7029494	1.00[CHB][hapmap]
rs7031343	0.90[ASN][1000 genomes]
rs7034760	0.92[AFR][1000 genomes]
rs7874645	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs981564	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1032113	chr9:13861066-13923136	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032447	chr9:13861066-13923673	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv613635	chr9:13893246-13961462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13897800-13901600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:13898400-13902600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr9:13898600-13901600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:13898800-13901600	Enhancers	HMEC	breast
5	chr9:13898800-13901800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:13898800-13901800	Enhancers	NHEK	skin
7	chr9:13899400-13901600	Enhancers	Adipose Nuclei	Adipose
8	chr9:13899800-13901800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr9:13900000-13901800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr9:13900000-13901800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr9:13900200-13902000	Enhancers	Psoas Muscle	Psoas
12	chr9:13900400-13901800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr9:13900800-13901600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr9:13900800-13901800	Enhancers	Fetal Heart	heart
15	chr9:13901000-13902000	Enhancers	Right Ventricle	heart
16	chr9:13901400-13904200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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