Variant report

Variant	rs9699384
Chromosome Location	chrY:16707631-16707632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3409548	chrY:16169870-17053457	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv869394	chrY:16699218-17364088	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island lncRNA miRNA target site	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrY:16652800-16724800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chrY:16672800-16718000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chrY:16691400-16725400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chrY:16694800-16724400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chrY:16698800-16724600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chrY:16699800-16724800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chrY:16700000-16710200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chrY:16700400-16738000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chrY:16701200-16729000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chrY:16702000-16711000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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