Variant report

Variant	rs9705644
Chromosome Location	chr12:64589827-64589828
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:64586725..64590184-chr12:64613971..64617345,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174206	Chromatin interaction
ENSG00000243024	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2279740	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3509287	chr12:64526217-64736995	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3509288	chr12:64526217-64736995	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64574600-64597000	Weak transcription	Esophagus	oesophagus
2	chr12:64575000-64615200	Weak transcription	Psoas Muscle	Psoas
3	chr12:64575200-64597000	Weak transcription	Aorta	Aorta
4	chr12:64575400-64590400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr12:64575600-64607600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr12:64575600-64615000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr12:64575800-64615200	Weak transcription	Fetal Stomach	stomach
8	chr12:64576000-64597200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr12:64576000-64615000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr12:64581200-64597000	Weak transcription	HSMMtube	muscle
11	chr12:64581400-64614600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr12:64581800-64615400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr12:64582600-64614600	Weak transcription	Hela-S3	cervix
14	chr12:64582600-64614600	Weak transcription	NHDF-Ad	bronchial
15	chr12:64583200-64615400	Weak transcription	Placenta	Placenta
16	chr12:64584800-64615200	Weak transcription	Thymus	Thymus
17	chr12:64586000-64611800	Weak transcription	Small Intestine	intestine
18	chr12:64586200-64597800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr12:64586200-64615200	Weak transcription	Right Ventricle	heart
20	chr12:64586400-64599800	Weak transcription	Stomach Mucosa	stomach
21	chr12:64586800-64604200	Weak transcription	Ovary	ovary
22	chr12:64587400-64609600	Weak transcription	K562	blood
23	chr12:64588000-64595600	Weak transcription	Brain Substantia Nigra	brain
24	chr12:64588000-64596400	Weak transcription	Brain Anterior Caudate	brain
25	chr12:64588000-64600800	Weak transcription	Lung	lung
26	chr12:64588200-64597000	Weak transcription	NHEK	skin
27	chr12:64588200-64613000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr12:64588400-64596400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr12:64588400-64597000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr12:64588400-64597000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr12:64588400-64597000	Weak transcription	Fetal Muscle Leg	muscle
32	chr12:64588400-64597000	Weak transcription	Left Ventricle	heart
33	chr12:64588400-64597000	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr12:64588400-64597600	Weak transcription	Brain Angular Gyrus	brain
35	chr12:64588400-64597800	Weak transcription	Pancreas	Pancrea
36	chr12:64588400-64605600	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr12:64588400-64605800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr12:64588400-64606200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr12:64588400-64606400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr12:64588400-64607200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr12:64588400-64613000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr12:64588400-64613000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr12:64588400-64614000	Weak transcription	Brain Cingulate Gyrus	brain
44	chr12:64588400-64614600	Weak transcription	HMEC	breast
45	chr12:64588400-64614800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr12:64588400-64615000	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr12:64588400-64615000	Weak transcription	HSMM	muscle
48	chr12:64588400-64615200	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr12:64588400-64615400	Weak transcription	Spleen	Spleen
50	chr12:64588600-64595600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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