Variant report
| Variant | rs9705969 |
|---|---|
| Chromosome Location | chr8:64668530-64668531 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10783317 | 0.84[ASN][1000 genomes] |
| rs10875817 | 0.82[ASN][1000 genomes] |
| rs10875944 | 0.87[ASN][1000 genomes] |
| rs10875945 | 0.87[ASN][1000 genomes] |
| rs10875950 | 0.81[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10875951 | 0.87[ASN][1000 genomes] |
| rs10875961 | 0.84[ASN][1000 genomes] |
| rs11168802 | 0.83[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11168978 | 0.87[ASN][1000 genomes] |
| rs11169086 | 0.84[ASN][1000 genomes] |
| rs11169087 | 0.84[ASN][1000 genomes] |
| rs11169094 | 0.84[ASN][1000 genomes] |
| rs11514109 | 0.82[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12368548 | 0.84[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1472658 | 0.81[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1486341 | 0.87[ASN][1000 genomes] |
| rs1564978 | 0.84[ASN][1000 genomes] |
| rs1875610 | 0.84[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2062758 | 0.87[ASN][1000 genomes] |
| rs2220267 | 0.84[ASN][1000 genomes] |
| rs2387982 | 0.84[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2387983 | 0.84[ASN][1000 genomes] |
| rs4768225 | 0.84[ASN][1000 genomes] |
| rs4768240 | 0.82[ASN][1000 genomes] |
| rs6580697 | 0.84[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6580718 | 0.84[ASN][1000 genomes] |
| rs7294397 | 0.84[ASN][1000 genomes] |
| rs7970273 | 0.87[ASN][1000 genomes] |
| rs7971075 | 0.84[ASN][1000 genomes] |
| rs9739497 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831344 | chr8:64658229-64712338 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:64666400-64671200 | Weak transcription | GM12878-XiMat | blood |
