Variant report

Variant	rs9706467
Chromosome Location	chr12:8543323-8543324
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:177)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:177 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr12:8543095-8543426	A549	lung:	n/a	n/a
2	CTCF	chr12:8543200-8543350	GM12869	blood:	n/a	n/a
3	CTCF	chr12:8543220-8543370	GM12869	blood:	n/a	n/a
4	CTCF	chr12:8543300-8543450	GM12865	blood:	n/a	n/a
5	ZNF143	chr12:8543089-8543399	GM12878	blood:	n/a	n/a
6	ZEB1	chr12:8543069-8543425	GM12878	blood:	n/a	n/a
7	TCF3	chr12:8543046-8543526	GM12878	blood:	n/a	n/a
8	SMC3	chr12:8543097-8543396	Hela-S3	cervix:	n/a	n/a
9	RAD21	chr12:8543104-8543386	HepG2	liver:	n/a	n/a
10	CTCF	chr12:8543200-8543350	AG04450	lung:	n/a	n/a
11	YY1	chr12:8543026-8543338	HepG2	liver:	n/a	n/a
12	CTCF	chr12:8543220-8543370	HA-sp	spinal cord:	n/a	n/a
13	CTCF	chr12:8543114-8543426	NHEK	skin:	n/a	n/a
14	POLR2A	chr12:8542684-8543367	H1-hESC	embryonic stem cell:	n/a	n/a
15	RAD21	chr12:8542954-8543550	SK-N-SH	brain:	n/a	n/a
16	ZEB1	chr12:8543142-8543417	GM12878	blood:	n/a	n/a
17	RAD21	chr12:8543040-8543413	IMR90	lung:	n/a	n/a
18	CTCF	chr12:8543260-8543410	GM12865	blood:	n/a	n/a
19	CTCF	chr12:8543200-8543350	GM06990	blood:	n/a	n/a
20	CTCF	chr12:8543200-8543350	AoAF	blood vessel:	n/a	n/a
21	CTCF	chr12:8543147-8543406	ProgFib	skin:	n/a	n/a
22	CTCF	chr12:8543176-8543350	Medullo	brain:	n/a	n/a
23	CTCF	chr12:8543116-8543408	LNCaP	prostate:	n/a	n/a
24	CTCF	chr12:8543180-8543330	NHDF-neo	bronchial:	n/a	n/a
25	SMC3	chr12:8543042-8543418	GM12878	blood:	n/a	n/a
26	CTCF	chr12:8543109-8543433	Spleen_OC	spleen:	n/a	n/a
27	CTCF	chr12:8543183-8543387	MCF-7	breast:	n/a	n/a
28	CTCF	chr12:8543220-8543370	HPAF	blood vessel:	n/a	n/a
29	CTCF	chr12:8543220-8543370	HepG2	liver:	n/a	n/a
30	CTCF	chr12:8543280-8543430	SAEC	small airway:	n/a	n/a
31	CTCF	chr12:8543121-8543394	SK-N-SH_RA	brain:	n/a	n/a
32	CTCF	chr12:8543220-8543370	AG10803	skin:	n/a	n/a
33	PAX5	chr12:8543098-8543394	GM12878	blood:	n/a	n/a
34	CTCF	chr12:8543220-8543370	HEK293	kidney:	n/a	n/a
35	RAD21	chr12:8543029-8543420	SK-N-SH_RA	brain:	n/a	n/a
36	CTCF	chr12:8543220-8543370	SK-N-SH_RA	brain:	n/a	n/a
37	CTCF	chr12:8543240-8543390	GM12872	blood:	n/a	n/a
38	CTCF	chr12:8543191-8543402	H1-hESC	embryonic stem cell:	n/a	n/a
39	CTCF	chr12:8543180-8543330	WI-38	lung:	n/a	n/a
40	CTCF	chr12:8543300-8543450	GM12871	blood:	n/a	n/a
41	CTCF	chr12:8542957-8543462	A549	lung:	n/a	n/a
42	TAF1	chr12:8542979-8543366	H1-hESC	embryonic stem cell:	n/a	n/a
43	ZNF263	chr12:8542862-8543439	HEK293-T-REx	kidney:	n/a	n/a
44	CTCF	chr12:8543220-8543370	GM06990	blood:	n/a	n/a
45	RAD21	chr12:8543054-8543386	HepG2	liver:	n/a	n/a
46	CTCF	chr12:8543135-8543421	Fibrobl	skin:	n/a	n/a
47	RAD21	chr12:8543112-8543343	GM12878	blood:	n/a	n/a
48	CTCF	chr12:8542950-8543537	K562	blood:	n/a	n/a
49	CTCF	chr12:8543260-8543410	GM12875	blood:	n/a	n/a
50	CTCF	chr12:8543065-8543450	IMR90	lung:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr12:8543302-8543352	SK-N-SH	brain:	n/a
2	chr12:8543302-8543352	AG10803	skin:	n/a
3	chr12:8543302-8543352	NHDF-neo	bronchial:	n/a
4	chr12:8543302-8543352	RPTEC	kidney:	n/a
5	chr12:8543302-8543352	SAEC	small airway:	n/a
6	chr12:8543302-8543352	HL-60	blood:	n/a
7	chr12:8543302-8543352	PFSK-1	brain:	n/a
8	chr12:8543302-8543352	GM12891	blood:	n/a
9	chr12:8543302-8543352	AG04449	skin:	fetal
10	chr12:8543302-8543352	HNPCEpiC	eye:	n/a
11	chr12:8543302-8543352	AG04450	lung:	fetal
12	chr12:8543302-8543352	ECC-1	luminal epithelium:	n/a
13	chr12:8543302-8543352	HPAEpiC	pulmonary alveolar:	n/a
14	chr12:8543302-8543352	MCF10A-Er-Src	breast:	n/a
15	chr12:8543302-8543352	NT2-D1	testis:	n/a
16	chr12:8543302-8543352	HRE	kidney:	n/a
17	chr12:8543302-8543352	NHBE	bronchial:	n/a
18	chr12:8543302-8543352	HRPEpiC	eye:	n/a
19	chr12:8543302-8543352	HUVEC	blood vessel:	n/a
20	chr12:8543302-8543352	HCF	heart:	n/a
21	chr12:8543302-8543352	HCPEpiC	choroid plexus:	n/a
22	chr12:8543302-8543352	GM12878	blood:	n/a
23	chr12:8543302-8543352	NH-A	brain:	n/a
24	chr12:8543302-8543352	BE2_C	brain:	n/a
25	chr12:8543302-8543352	MCF-7	breast:	n/a
26	chr12:8543302-8543352	PANC-1	pancreas:	n/a
27	chr12:8543302-8543352	HCT-116	colon:	n/a
28	chr12:8543302-8543352	SK-N-SH_RA	brain:	n/a
29	chr12:8543302-8543352	T-47D	breast:	n/a
30	chr12:8543302-8543352	U87	brain:	n/a
31	chr12:8543302-8543352	NB4	blood:	n/a
32	chr12:8543302-8543352	HIPEpiC	eye:	n/a
33	chr12:8543302-8543352	HMEC	breast:	n/a
34	chr12:8543302-8543352	HepG2	liver:	n/a
35	chr12:8543302-8543352	GM12892	blood:	n/a
36	chr12:8543302-8543352	Hepatocyte	liver:	n/a
37	chr12:8543302-8543352	ovcar-3	ovarian:	n/a
38	chr12:8543302-8543352	HCM	heart:	n/a
39	chr12:8543302-8543352	BJ	skin:	n/a
40	chr12:8543302-8543352	SK-N-MC	brain:	n/a
41	chr12:8543302-8543352	Caco-2	colon:	n/a
42	chr12:8543302-8543352	LNCaP	prostate:	n/a
43	chr12:8543302-8543352	K562	blood:	n/a
44	chr12:8543302-8543352	SKMC	muscle:	n/a
45	chr12:8543302-8543352	Jurkat	blood:	n/a
46	chr12:8543302-8543352	HEEpiC	esophagus:	n/a
47	chr12:8543302-8543352	HRCEpiC	kidney:	n/a
48	chr12:8543302-8543352	HEK293	kidney:	embryo
49	chr12:8543302-8543352	GM06990	blood:	n/a
50	chr12:8543302-8543352	A549	lung:	n/a

No data

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CLEC4E-2	chr12:8542866-8543348	ENSG00000226091.2
2	lnc-CLEC4E-2	chr12:8542866-8543398	NONHSAT026332
3	lnc-CLEC4E-2	chr12:8542866-8543348	NR_024420

No data

Variant related genes	Relation type
LINC00937	TF binding region
LINC00937	CpG island

Extended variants
information (count: 84 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11045054	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11045055	0.86[EUR][1000 genomes]
rs11045056	0.87[EUR][1000 genomes]
rs11045060	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12370059	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34978072	0.81[AMR][1000 genomes]
rs4366557	0.85[EUR][1000 genomes]
rs7954211	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:76 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048545	chr12:7778760-8608231	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv541368	chr12:7778760-8608231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
3	esv2758292	chr12:7856819-8623987	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
4	esv2759877	chr12:7856819-8623987	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
5	nsv428270	chr12:7856819-8623987	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
6	esv1793572	chr12:7995827-8568422	Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
7	nsv916941	chr12:8003501-8608220	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
8	nsv1040302	chr12:8245364-8695612	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	nsv541397	chr12:8245364-8695612	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	nsv427902	chr12:8276546-8623987	Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
11	esv2757488	chr12:8280755-8580804	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
12	esv1799331	chr12:8308073-8568222	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
13	nsv1040962	chr12:8317823-8584660	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
14	nsv1036525	chr12:8317823-8603777	Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
15	nsv557332	chr12:8321048-8598823	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
16	nsv557333	chr12:8321048-8599397	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
17	esv16224	chr12:8323225-8589822	Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
18	nsv1036867	chr12:8329500-8581129	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
19	esv1804506	chr12:8333011-8561680	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
20	nsv1050342	chr12:8334885-8581129	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
21	nsv1048534	chr12:8334885-8584660	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
22	esv1816305	chr12:8343961-8584660	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
23	nsv1040012	chr12:8357507-8584660	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
24	esv2760766	chr12:8357507-8584672	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
25	nsv898733	chr12:8357507-8600363	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
26	esv1848469	chr12:8361724-8589775	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
27	nsv1050188	chr12:8362038-8581129	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
28	nsv1050955	chr12:8362038-8584660	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
29	nsv898734	chr12:8367694-8568358	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
30	nsv1043700	chr12:8370702-8584660	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
31	nsv1054161	chr12:8371320-8584660	Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
32	nsv973015	chr12:8371568-8602961	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
33	nsv1050081	chr12:8378239-8584660	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
34	nsv1039971	chr12:8393816-8584660	Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
35	nsv1052610	chr12:8401834-8584660	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
36	nsv1046231	chr12:8401834-8603777	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
37	nsv1047103	chr12:8412050-8562623	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
38	nsv1043254	chr12:8412050-8581129	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
39	nsv1054850	chr12:8412050-8584660	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
40	nsv1042364	chr12:8417967-8605829	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
41	nsv1044464	chr12:8428423-8581129	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
42	nsv1046598	chr12:8428423-8584660	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
43	nsv1041859	chr12:8436238-8584660	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
44	nsv1037314	chr12:8449100-8584660	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
45	nsv1044543	chr12:8449100-8792569	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
46	nsv508664	chr12:8450876-8604691	Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
47	nsv1035313	chr12:8468557-8584660	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
48	nsv898735	chr12:8479342-8568358	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
49	nsv898736	chr12:8479342-8605216	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
50	nsv1039504	chr12:8494944-8780137	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9706467	LINC00937	cis	lung	GTEx

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8542200-8548600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:8542400-8543400	Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr12:8542600-8543400	Active TSS	Primary T cells from cord blood	blood
4	chr12:8542600-8543400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
5	chr12:8542600-8543400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr12:8542800-8543400	Active TSS	Stomach Smooth Muscle	stomach
7	chr12:8543000-8543400	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
8	chr12:8543000-8543400	Active TSS	Brain Germinal Matrix	brain
9	chr12:8543000-8543400	Active TSS	Colonic Mucosa	Colon
10	chr12:8543000-8543600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
11	chr12:8543000-8548400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr12:8543200-8543400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr12:8543200-8543400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr12:8543200-8543400	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr12:8543200-8543400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr12:8543200-8543400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr12:8543200-8543400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr12:8543200-8543400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr12:8543200-8543400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr12:8543200-8543400	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr12:8543200-8543400	Flanking Active TSS	Pancreas	Pancrea
22	chr12:8543200-8543600	Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr12:8543200-8543600	Enhancers	Primary B cells from cord blood	blood
24	chr12:8543200-8543600	Enhancers	Primary B cells from peripheral blood	blood
25	chr12:8543200-8543600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
26	chr12:8543200-8543600	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr12:8543200-8543600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
28	chr12:8543200-8545200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr12:8543200-8545200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr12:8543200-8545200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr12:8543200-8545200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr12:8543200-8545400	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr12:8543200-8545400	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr12:8543200-8548400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr12:8543200-8548400	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr12:8543200-8548800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr12:8543200-8549000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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