Variant report

Variant	rs9707664
Chromosome Location	chr14:31446961-31446962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31444951..31447153-chr14:31557312..31559493,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10483360	0.85[EUR][1000 genomes]
rs1474802	0.85[EUR][1000 genomes]
rs17097503	0.84[AFR][1000 genomes]
rs17097524	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17097601	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45536734	0.85[EUR][1000 genomes]
rs45600940	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4981084	0.85[EUR][1000 genomes]
rs55687047	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55956948	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56240895	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56862737	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59048919	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59589591	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61508230	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7140646	0.85[EUR][1000 genomes]
rs7156429	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs8021378	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564169	chr14:30819087-31541494	Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv901586	chr14:31365884-31465241	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3411274	chr14:31442250-31460681	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31420200-31464400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:31436000-31457400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr14:31436200-31447000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr14:31436200-31449200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr14:31436200-31457200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr14:31436400-31455200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr14:31436400-31457200	Weak transcription	HSMM	muscle
8	chr14:31436400-31457800	Weak transcription	NHEK	skin
9	chr14:31437000-31451600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr14:31440000-31457200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr14:31440400-31455200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr14:31440400-31462000	Weak transcription	Right Atrium	heart
13	chr14:31441000-31464800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr14:31441200-31457000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr14:31441200-31457400	Weak transcription	NH-A	brain
16	chr14:31441600-31449800	Weak transcription	K562	blood
17	chr14:31441600-31464200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr14:31442400-31449800	Weak transcription	Fetal Intestine Small	intestine
19	chr14:31442400-31461400	Weak transcription	Left Ventricle	heart
20	chr14:31442400-31494400	Weak transcription	Gastric	stomach
21	chr14:31442600-31457800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr14:31443000-31459800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr14:31443200-31450600	Weak transcription	Primary T cells from cord blood	blood
24	chr14:31443200-31460200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr14:31443400-31447400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr14:31443400-31451400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr14:31443400-31460000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr14:31443400-31493800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr14:31443600-31462200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr14:31444000-31450400	Weak transcription	GM12878-XiMat	blood
31	chr14:31444000-31472800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr14:31444200-31449200	Weak transcription	NHDF-Ad	bronchial
33	chr14:31444200-31457000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr14:31444200-31459800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr14:31444200-31464000	Weak transcription	Brain Anterior Caudate	brain
36	chr14:31444400-31449200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr14:31444400-31460600	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr14:31444600-31449200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr14:31444800-31455800	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr14:31445000-31449200	Weak transcription	Primary B cells from peripheral blood	blood
41	chr14:31445000-31458200	Weak transcription	Psoas Muscle	Psoas
42	chr14:31445000-31460600	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr14:31445600-31447200	Weak transcription	Brain Hippocampus Middle	brain
44	chr14:31445800-31447000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr14:31445800-31447200	Weak transcription	Brain Substantia Nigra	brain
46	chr14:31445800-31449200	Weak transcription	A549	lung
47	chr14:31445800-31455000	Weak transcription	Colon Smooth Muscle	Colon
48	chr14:31445800-31459600	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr14:31446400-31449200	Weak transcription	Liver	Liver
50	chr14:31446400-31457000	Weak transcription	Fetal Stomach	stomach

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