Variant report

Variant	rs9713891
Chromosome Location	chr3:180045597-180045598
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10937030	0.98[ASN][1000 genomes]
rs12054337	0.83[EUR][1000 genomes]
rs12486206	0.82[ASN][1000 genomes]
rs12491089	0.83[ASN][1000 genomes]
rs12638851	0.81[ASN][1000 genomes]
rs12638877	0.83[ASN][1000 genomes]
rs1402219	0.80[EUR][1000 genomes]
rs1402223	0.88[EUR][1000 genomes]
rs1464358	0.98[ASN][1000 genomes]
rs16831406	0.83[ASN][1000 genomes]
rs2203980	0.82[EUR][1000 genomes]
rs2337367	0.99[ASN][1000 genomes]
rs2878951	0.98[ASN][1000 genomes]
rs2878954	0.80[ASN][1000 genomes]
rs3914867	0.81[ASN][1000 genomes]
rs3914868	0.81[ASN][1000 genomes]
rs4572765	0.83[EUR][1000 genomes]
rs4854970	0.88[ASN][1000 genomes]
rs62290972	0.85[EUR][1000 genomes]
rs62290973	0.85[EUR][1000 genomes]
rs62290975	0.85[EUR][1000 genomes]
rs62290976	0.81[EUR][1000 genomes]
rs62292326	0.84[ASN][1000 genomes]
rs62292329	0.88[EUR][1000 genomes]
rs62292330	0.85[EUR][1000 genomes]
rs6789456	0.85[EUR][1000 genomes]
rs6792185	0.85[EUR][1000 genomes]
rs7636890	0.93[ASN][1000 genomes]
rs7644566	0.86[ASN][1000 genomes]
rs7646778	0.83[EUR][1000 genomes]
rs7646787	0.83[EUR][1000 genomes]
rs939440	0.86[ASN][1000 genomes]
rs939442	0.86[ASN][1000 genomes]
rs9683358	0.84[ASN][1000 genomes]
rs9713189	1.00[ASN][1000 genomes]
rs9867767	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv878040	chr3:179823887-180128288	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv997388	chr3:179899279-180172349	Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv536817	chr3:179899279-180172349	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv878041	chr3:179983857-180097855	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180039000-180047400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:180041600-180046800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:180044600-180045800	Enhancers	GM12878-XiMat	blood
4	chr3:180044800-180047000	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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