Variant report

Variant	rs9714220
Chromosome Location	chr3:118725356-118725357
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10934470	0.85[EUR][1000 genomes]
rs1369580	0.87[EUR][1000 genomes]
rs1369581	0.87[EUR][1000 genomes]
rs1369582	0.84[EUR][1000 genomes]
rs1435661	0.87[EUR][1000 genomes]
rs1435662	0.87[EUR][1000 genomes]
rs1435664	0.87[EUR][1000 genomes]
rs1435667	0.84[EUR][1000 genomes]
rs2866321	0.81[EUR][1000 genomes]
rs4687835	0.87[EUR][1000 genomes]
rs61019124	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6438481	0.87[EUR][1000 genomes]
rs6774155	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6798142	0.83[ASN][1000 genomes]
rs6803273	0.87[EUR][1000 genomes]
rs73185835	0.85[ASN][1000 genomes]
rs7632458	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7641626	0.83[EUR][1000 genomes]
rs964493	0.87[EUR][1000 genomes]
rs9840838	0.83[ASN][1000 genomes]
rs9850865	0.87[EUR][1000 genomes]
rs9850939	0.87[EUR][1000 genomes]
rs9872674	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv1010475	chr3:118657382-118789714	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv877369	chr3:118681771-118824418	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2756586	chr3:118688611-118863998	Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv877370	chr3:118711777-118799682	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv877371	chr3:118711777-118824418	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1001072	chr3:118719480-118820645	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv591350	chr3:118719480-118823141	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118713000-118727000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:118715400-118731800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr3:118716800-118729000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:118720200-118726600	Weak transcription	Brain Substantia Nigra	brain
5	chr3:118720200-118727000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:118725000-118727400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:118725200-118737600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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