Variant report

Variant	rs9718373
Chromosome Location	chr7:102997676-102997677
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102989850..102992872-chr7:102995534..102998774,5	K562	blood:
2	chr7:102995841..102998426-chr7:103001161..103002926,2	MCF-7	breast:
3	chr7:102991625..102994191-chr7:102997426..102999083,2	K562	blood:
4	chr7:102982971..102990450-chr7:102994756..102999895,11	K562	blood:
5	chr7:102983625..102990524-chr7:102994295..102998538,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105821	Chromatin interaction
ENSG00000235354	Chromatin interaction
ENSG00000161057	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11532769	1.00[AMR][1000 genomes]
rs11560368	0.84[AMR][1000 genomes]
rs11560369	1.00[AMR][1000 genomes]
rs12669855	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17156122	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7782185	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102988600-103002400	Weak transcription	Spleen	Spleen
2	chr7:102989000-103006200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:102989200-103002400	Weak transcription	Esophagus	oesophagus
4	chr7:102989200-103006200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:102989200-103007800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:102989200-103010600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:102989200-103011400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:102989200-103013200	Weak transcription	Stomach Mucosa	stomach
9	chr7:102989600-103000800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr7:102989600-103002400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr7:102989600-103002600	Weak transcription	Ovary	ovary
12	chr7:102989600-103007000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:102989800-103021200	Weak transcription	Fetal Heart	heart
14	chr7:102990000-103000800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr7:102990200-103002400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr7:102990600-102998800	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr7:102990600-103010600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:102990800-102997800	Weak transcription	Brain Germinal Matrix	brain
19	chr7:102990800-103011200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr7:102991000-103010800	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr7:102991000-103011400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:102991200-102998800	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr7:102991200-103010200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr7:102991400-103002400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr7:102991400-103009000	Strong transcription	A549	lung
26	chr7:102991400-103009400	Strong transcription	Primary B cells from peripheral blood	blood
27	chr7:102991400-103011200	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr7:102991400-103011400	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr7:102991400-103011400	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr7:102991400-103011600	Strong transcription	Fetal Thymus	thymus
31	chr7:102991600-102998000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr7:102991600-102999400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr7:102991600-103010600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr7:102991600-103010800	Strong transcription	NH-A	brain
35	chr7:102991600-103011200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr7:102991600-103011200	Strong transcription	Muscle Satellite Cultured Cells	--
37	chr7:102991800-103007600	Weak transcription	Psoas Muscle	Psoas
38	chr7:102991800-103011200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr7:102992000-103009400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr7:102992000-103010400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr7:102992000-103010400	Strong transcription	Osteobl	bone
42	chr7:102992000-103011200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr7:102992400-103009800	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr7:102992400-103011400	Strong transcription	Adipose Nuclei	Adipose
45	chr7:102992600-103005600	Strong transcription	K562	blood
46	chr7:102992800-102998400	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr7:102992800-102998800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr7:102992800-103010200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr7:102992800-103010200	Strong transcription	Placenta	Placenta
50	chr7:102992800-103011200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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