Variant report

Variant	rs9738423
Chromosome Location	chr12:62539152-62539153
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10747952	1.00[EUR][1000 genomes]
rs10877803	1.00[EUR][1000 genomes]
rs1245433	1.00[EUR][1000 genomes]
rs1270847	1.00[EUR][1000 genomes]
rs1358706	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs1358707	1.00[EUR][1000 genomes]
rs1358708	1.00[EUR][1000 genomes]
rs1663498	1.00[EUR][1000 genomes]
rs17125738	1.00[MEX][hapmap]
rs1795213	1.00[EUR][1000 genomes]
rs2464111	1.00[MEX][hapmap]
rs2464112	1.00[EUR][1000 genomes]
rs7964628	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62535800-62542000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr12:62535800-62545000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr12:62538000-62545000	Weak transcription	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links