Variant report

Variant	rs9745472
Chromosome Location	chr16:75629918-75629919
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:75609885..75612735-chr16:75628423..75630000,2	K562	blood:
2	chr16:75628689..75631132-chr16:75648256..75650154,2	K562	blood:
3	chr16:75627208..75629939-chr16:75629940..75634197,5	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55754264	0.87[AFR][1000 genomes]
rs56029288	0.81[AFR][1000 genomes]
rs57483280	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs57709930	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs59444431	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs59487462	0.81[AFR][1000 genomes]
rs6564265	0.87[YRI][hapmap]
rs7190374	0.81[YRI][hapmap]
rs7200517	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73615016	0.81[AFR][1000 genomes]
rs73615046	0.83[AFR][1000 genomes]
rs73615054	0.83[AFR][1000 genomes]
rs73615059	0.89[AFR][1000 genomes]
rs8047796	0.83[AFR][1000 genomes]
rs8051251	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8052388	1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916502	chr16:74845880-75732365	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv931939	chr16:75261354-75765025	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	nsv532561	chr16:75519574-75636977	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
4	nsv532562	chr16:75614947-76371158	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv1062010	chr16:75628562-75825725	Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv1064880	chr16:75628562-75895699	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv542960	chr16:75628562-75895699	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75607600-75630800	Weak transcription	Fetal Brain Male	brain
2	chr16:75610400-75634000	Weak transcription	Hela-S3	cervix
3	chr16:75610600-75633400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr16:75610600-75635200	Weak transcription	Fetal Kidney	kidney
5	chr16:75611400-75634000	Weak transcription	Colonic Mucosa	Colon
6	chr16:75612000-75631000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr16:75612000-75635600	Weak transcription	Small Intestine	intestine
8	chr16:75612400-75631000	Weak transcription	Gastric	stomach
9	chr16:75612400-75631200	Weak transcription	Esophagus	oesophagus
10	chr16:75613200-75633400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr16:75613400-75630800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr16:75613400-75635200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr16:75613600-75630800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr16:75613600-75631000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr16:75613600-75633000	Weak transcription	Ovary	ovary
16	chr16:75613800-75630800	Weak transcription	HMEC	breast
17	chr16:75613800-75632800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr16:75614400-75630600	Weak transcription	Thymus	Thymus
19	chr16:75614400-75630800	Weak transcription	Liver	Liver
20	chr16:75614400-75630800	Weak transcription	Fetal Brain Female	brain
21	chr16:75614400-75631000	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr16:75614400-75631000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr16:75615000-75633400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr16:75615400-75631000	Weak transcription	Fetal Thymus	thymus
25	chr16:75619000-75630600	Weak transcription	Primary B cells from cord blood	blood
26	chr16:75619600-75630800	Weak transcription	Primary B cells from peripheral blood	blood
27	chr16:75621000-75631000	Weak transcription	Pancreas	Pancrea
28	chr16:75621000-75631000	Weak transcription	Spleen	Spleen
29	chr16:75621200-75631000	Weak transcription	Brain Angular Gyrus	brain
30	chr16:75622000-75630800	Weak transcription	Placenta	Placenta
31	chr16:75623400-75630800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr16:75623600-75631000	Weak transcription	Lung	lung
33	chr16:75625200-75631200	Weak transcription	Aorta	Aorta
34	chr16:75625400-75630000	Weak transcription	Fetal Intestine Small	intestine
35	chr16:75625400-75631000	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr16:75625400-75631200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr16:75625400-75635400	Weak transcription	Brain Substantia Nigra	brain
38	chr16:75625600-75630800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr16:75625600-75630800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr16:75625600-75631200	Weak transcription	Brain Anterior Caudate	brain
41	chr16:75625600-75633400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr16:75625600-75648000	Weak transcription	Fetal Heart	heart
43	chr16:75626200-75631000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr16:75626400-75631000	Weak transcription	Fetal Lung	lung
45	chr16:75626600-75633400	Weak transcription	Colon Smooth Muscle	Colon
46	chr16:75626800-75630800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr16:75626800-75633200	Weak transcription	Rectal Smooth Muscle	rectum
48	chr16:75628000-75630800	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr16:75628000-75631000	Weak transcription	Left Ventricle	heart
50	chr16:75628000-75633400	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links