Variant report

Variant	rs9749354
Chromosome Location	chr19:55674778-55674779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000129991	Chromatin interaction
ENSG00000160439	Chromatin interaction
ENSG00000267577	Chromatin interaction
ENSG00000108106	Chromatin interaction
ENSG00000108107	Chromatin interaction
ENSG00000233493	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11542503	1.00[ASN][1000 genomes]
rs3729707	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3859541	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59637479	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6509928	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6509929	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7249445	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7249985	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7252414	1.00[ASN][1000 genomes]
rs73617692	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73617693	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73619532	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8102415	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8102456	1.00[ASN][1000 genomes]
rs8107129	0.97[AFR][1000 genomes]
rs8107736	0.97[AFR][1000 genomes]
rs8113062	1.00[ASN][1000 genomes]
rs9749340	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534462	chr19:55028722-55683018	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
2	nsv912451	chr19:55595687-55680746	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv912453	chr19:55672007-55690398	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:55671600-55677600	Weak transcription	Right Atrium	heart
2	chr19:55671800-55677600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr19:55672000-55677200	Weak transcription	NHEK	skin
4	chr19:55672200-55676800	Weak transcription	Hela-S3	cervix
5	chr19:55672600-55677200	Weak transcription	Left Ventricle	heart
6	chr19:55672600-55677200	Weak transcription	Pancreas	Pancrea
7	chr19:55672800-55677000	Weak transcription	Right Ventricle	heart
8	chr19:55672800-55677000	Weak transcription	K562	blood
9	chr19:55673200-55677200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr19:55673600-55677200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr19:55674000-55676600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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