Variant report

Variant	rs9751648
Chromosome Location	chr2:110269236-110269237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:110064468..110066338-chr2:110266545..110269505,2	MCF-7	breast:
2	chr2:110267783..110269712-chr2:110370838..110373129,2	MCF-7	breast:
3	chr2:109898486..109901006-chr2:110267538..110269530,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198142	Chromatin interaction
ENSG00000186522	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10195867	0.91[EUR][1000 genomes]
rs10496432	0.85[EUR][1000 genomes]
rs11265638	1.00[ASN][1000 genomes]
rs13006297	0.94[EUR][1000 genomes]
rs13412327	0.92[EUR][1000 genomes]
rs28464093	0.91[EUR][1000 genomes]
rs28553892	0.91[EUR][1000 genomes]
rs28570680	0.85[EUR][1000 genomes]
rs28599496	0.83[EUR][1000 genomes]
rs3213866	0.83[EUR][1000 genomes]
rs34248247	0.80[ASN][1000 genomes]
rs34269507	0.91[EUR][1000 genomes]
rs34311530	0.85[EUR][1000 genomes]
rs34337102	1.00[ASN][1000 genomes]
rs34517320	0.83[EUR][1000 genomes]
rs34821058	0.83[EUR][1000 genomes]
rs34919866	1.00[ASN][1000 genomes]
rs35067919	1.00[ASN][1000 genomes]
rs35120088	0.92[EUR][1000 genomes]
rs35223862	0.91[EUR][1000 genomes]
rs35392016	0.92[EUR][1000 genomes]
rs35531839	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35955221	0.92[EUR][1000 genomes]
rs4482487	0.83[EUR][1000 genomes]
rs4953721	0.91[EUR][1000 genomes]
rs4953729	0.85[EUR][1000 genomes]
rs4953730	0.85[EUR][1000 genomes]
rs4953788	0.85[EUR][1000 genomes]
rs55794045	0.91[EUR][1000 genomes]
rs56794190	0.83[EUR][1000 genomes]
rs58031484	0.85[EUR][1000 genomes]
rs6709945	0.85[EUR][1000 genomes]
rs6719215	0.85[EUR][1000 genomes]
rs6725792	0.85[EUR][1000 genomes]
rs71425251	1.00[ASN][1000 genomes]
rs71425253	1.00[ASN][1000 genomes]
rs71425254	1.00[ASN][1000 genomes]
rs72824772	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72824788	0.85[EUR][1000 genomes]
rs72824789	0.83[EUR][1000 genomes]
rs72824796	0.85[EUR][1000 genomes]
rs72824800	0.83[EUR][1000 genomes]
rs72824802	0.83[EUR][1000 genomes]
rs753492	0.83[EUR][1000 genomes]
rs7565483	0.85[EUR][1000 genomes]
rs7577865	0.85[EUR][1000 genomes]
rs9330317	0.94[EUR][1000 genomes]
rs9330321	0.88[EUR][1000 genomes]
rs9750931	0.89[EUR][1000 genomes]
rs9752531	0.91[EUR][1000 genomes]
rs9798179	0.92[EUR][1000 genomes]
rs9798478	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874777	chr2:109825516-110693317	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv874779	chr2:110030964-110270250	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv874780	chr2:110078080-110432886	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv3332462	chr2:110268770-110273157	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:110256200-110270800	Weak transcription	Esophagus	oesophagus
2	chr2:110256200-110270800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr2:110256200-110271400	Weak transcription	Ovary	ovary
4	chr2:110257800-110287800	Weak transcription	Gastric	stomach
5	chr2:110258200-110271200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr2:110261600-110271200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr2:110262800-110270400	Weak transcription	Right Ventricle	heart
8	chr2:110263800-110271000	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:110265600-110270800	Weak transcription	Fetal Kidney	kidney
10	chr2:110267600-110269400	Enhancers	Fetal Muscle Leg	muscle
11	chr2:110267800-110287600	Weak transcription	Right Atrium	heart
12	chr2:110268000-110270800	Enhancers	GM12878-XiMat	blood
13	chr2:110268200-110269400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr2:110268200-110271000	Weak transcription	Lung	lung
15	chr2:110268200-110271000	Weak transcription	NHLF	lung
16	chr2:110268400-110270800	Weak transcription	Spleen	Spleen
17	chr2:110268400-110271200	Weak transcription	Adipose Nuclei	Adipose
18	chr2:110269000-110269800	Enhancers	Placenta Amnion	Placenta Amnion
19	chr2:110269000-110270800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr2:110269000-110271000	Enhancers	Stomach Smooth Muscle	stomach
21	chr2:110269200-110270800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr2:110269200-110270800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr2:110269200-110271000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr2:110269200-110271000	Weak transcription	HSMM	muscle
25	chr2:110269200-110271200	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links