Variant report

Variant	rs9754889
Chromosome Location	chr3:21019445-21019446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56218933	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9830515	0.93[AFR][1000 genomes]
rs9850651	0.93[AFR][1000 genomes]
rs9872780	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999025	chr3:20738244-21042249	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv834629	chr3:20878902-21057592	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv876606	chr3:20957851-21049235	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv876607	chr3:20972475-21087219	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	nsv508211	chr3:20973371-21025544	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
6	esv1837277	chr3:21006294-21030097	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
7	nsv876608	chr3:21008710-21203048	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21017000-21019800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:21017600-21020200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:21017600-21020400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:21018000-21020400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:21018200-21020400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:21019200-21020200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:21019200-21020400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:21019200-21020600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:21019200-21020600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:21019200-21021800	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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