Variant report

Variant	rs9758071
Chromosome Location	chr3:118961589-118961590
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000163424	Chromatin interaction
ENSG00000144847	Chromatin interaction
ENSG00000121578	Chromatin interaction
ENSG00000241155	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11713838	0.87[EUR][1000 genomes]
rs3806698	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62265181	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7620966	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7637021	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv18354	chr3:118855337-119000251	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9758071	B4GALT4	cis	Esophagus Mucosa	GTEx

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118960000-118962000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:118960000-118962600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:118960000-118964400	Weak transcription	Esophagus	oesophagus
4	chr3:118960200-118964200	Weak transcription	Psoas Muscle	Psoas
5	chr3:118960200-118964600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:118960200-118964600	Weak transcription	Right Atrium	heart
7	chr3:118960200-118964800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:118960400-118964400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr3:118960400-118966200	Weak transcription	Primary T cells from cord blood	blood
10	chr3:118960600-118964400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr3:118960600-118964600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr3:118960600-118964800	Weak transcription	Adipose Nuclei	Adipose
13	chr3:118960600-118964800	Weak transcription	Placenta	Placenta
14	chr3:118960800-118964600	Weak transcription	Stomach Mucosa	stomach
15	chr3:118961000-118964600	Weak transcription	Right Ventricle	heart
16	chr3:118961200-118961600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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