Variant report

Variant	rs9758993
Chromosome Location	chr3:90488080-90488081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6771536	1.00[EUR][1000 genomes]
rs9682229	1.00[EUR][1000 genomes]
rs9682609	1.00[EUR][1000 genomes]
rs9799126	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10801	chr3:90280071-90504635	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv834763	chr3:90286654-90489157	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv820794	chr3:90312310-90504635	ZNF genes & repeats Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv590980	chr3:90313394-90504645	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv590983	chr3:90318628-90504645	Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv590984	chr3:90338519-90493882	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3415412	chr3:90484562-90504854	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3328765	chr3:90484762-90504854	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3356617	chr3:90486462-90490760	Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:90478000-90489400	Weak transcription	K562	blood
2	chr3:90479600-90494600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:90486000-90488200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:90486200-90491800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
5	chr3:90486400-90488200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
6	chr3:90486400-90488400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
7	chr3:90486400-90490600	Weak transcription	Right Ventricle	heart
8	chr3:90486600-90504600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
9	chr3:90487600-90505000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
10	chr3:90488000-90489600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr3:90488000-90490600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr3:90488000-90490600	Weak transcription	Brain Angular Gyrus	brain
13	chr3:90488000-90490600	Weak transcription	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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