Variant report

Variant	rs9759569
Chromosome Location	chr4:91603051-91603052
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10516876	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13142453	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13143178	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1514735	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1514738	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1567929	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1567930	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs17183170	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1849809	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1849810	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1983296	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4693246	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6822152	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6827499	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6851780	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6852796	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6853030	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6857209	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6858088	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9761411	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv879545	chr4:91546380-91603567	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879546	chr4:91546380-91606389	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879547	chr4:91546380-91661217	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv879548	chr4:91558486-91661217	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv879549	chr4:91568530-91603567	Flanking Active TSS ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv879550	chr4:91568530-91606389	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv879551	chr4:91568530-91615595	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv594832	chr4:91575741-91606389	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv4419	chr4:91582393-91612970	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv2431994	chr4:91596023-91604077	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
13	nsv435805	chr4:91596056-91604260	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
14	esv2631037	chr4:91596201-91603528	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
15	esv3465703	chr4:91596376-91603230	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
16	esv3506354	chr4:91596429-91603602	ZNF genes & repeats Active TSS Flanking Active TSS Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
17	esv8056	chr4:91596562-91603155	ZNF genes & repeats Flanking Active TSS Active TSS Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
18	esv991351	chr4:91596605-91603452	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
19	esv3506356	chr4:91596675-91603414	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
20	esv3508825	chr4:91596681-91603123	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
21	nsv461581	chr4:91596734-91647046	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv594833	chr4:91596734-91647046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv513148	chr4:91596740-91603839	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
24	nsv508298	chr4:91598023-91604884	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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