Variant report

Variant	rs9759852
Chromosome Location	chr4:26708799-26708800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26703041..26705408-chr4:26707992..26709632,2	K562	blood:

Variant related genes	Relation type
ENSG00000200999	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs260943	0.96[AFR][1000 genomes]
rs4516702	1.00[AFR][1000 genomes]
rs7676873	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1822380	chr4:26690284-26726780	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26666800-26732200	Weak transcription	Aorta	Aorta
2	chr4:26681400-26732400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:26681800-26718600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:26681800-26724400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr4:26684400-26732400	Weak transcription	Fetal Kidney	kidney
6	chr4:26687000-26727000	Weak transcription	Left Ventricle	heart
7	chr4:26692200-26712200	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:26692400-26726400	Weak transcription	Ovary	ovary
9	chr4:26693000-26711000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr4:26693000-26716000	Weak transcription	HSMM	muscle
11	chr4:26694200-26709600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:26694400-26718600	Weak transcription	Osteobl	bone
13	chr4:26694600-26711600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:26696200-26718800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:26696200-26726400	Weak transcription	Thymus	Thymus
16	chr4:26696200-26775400	Weak transcription	Brain Germinal Matrix	brain
17	chr4:26696400-26710600	Weak transcription	Fetal Thymus	thymus
18	chr4:26696400-26718600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:26696400-26726600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr4:26703400-26711000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:26703800-26715200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr4:26703800-26718600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:26703800-26718600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:26703800-26718800	Weak transcription	NH-A	brain
25	chr4:26704200-26711000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:26704600-26718600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:26705400-26753200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr4:26707600-26723400	Weak transcription	Psoas Muscle	Psoas
29	chr4:26707800-26717400	Weak transcription	Gastric	stomach

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