Variant report

Variant	rs9766945
Chromosome Location	chr6:117926920-117926921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:117926880-117927030	AG04450	lung:	n/a	n/a
2	RAD21	chr6:117926168-117926975	HCT-116	colon:	n/a	n/a
3	SMC3	chr6:117926249-117926967	SK-N-SH	brain:	n/a	n/a
4	CTCF	chr6:117926326-117927019	K562	blood:	n/a	chr6:117926557-117926578 chr6:117926562-117926580
5	CTCF	chr6:117926880-117927030	HRPEpiC	eye:	n/a	n/a
6	CTCF	chr6:117926900-117927050	GM12878	blood:	n/a	n/a
7	RAD21	chr6:117926081-117926988	SK-N-SH	brain:	n/a	n/a
8	CTCF	chr6:117926303-117926933	HCT-116	colon:	n/a	chr6:117926557-117926578 chr6:117926562-117926580
9	CTCF	chr6:117926171-117927011	A549	lung:	n/a	chr6:117926557-117926578 chr6:117926562-117926580
10	RAD21	chr6:117926192-117926935	A549	lung:	n/a	n/a
11	CTCF	chr6:117926226-117926930	SK-N-SH	brain:	n/a	chr6:117926557-117926578 chr6:117926562-117926580

No.	Distal block	Cell Line	Cell type
1	chr6:117799806..117802489-chr6:117925663..117927637,2	MCF-7	breast:
2	chr6:117799675..117800265-chr6:117926485..117927034,2	K562	blood:
3	chr6:117926709..117928281-chr6:117929948..117932095,2	K562	blood:
4	chr6:117926214..117926984-chr6:118150760..118151474,2	MCF-7	breast:
5	chr6:117901608..117904180-chr6:117924058..117926949,2	K562	blood:
6	chr6:117720859..117721735-chr6:117926183..117926996,4	MCF-7	breast:
7	chr6:117778670..117780280-chr6:117926024..117927756,2	K562	blood:
8	chr6:117926297..117927922-chr6:117929473..117932295,2	MCF-7	breast:
9	chr6:117919854..117927630-chr6:117992313..117999313,9	K562	blood:
10	chr6:117666555..117667566-chr6:117926041..117927041,3	K562	blood:
11	chr6:117920370..117923452-chr6:117923960..117927734,3	MCF-7	breast:

Variant related genes	Relation type
GOPC	TF binding region
ENSG00000153989	Chromatin interaction
ENSG00000207461	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10456911	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10456912	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10457319	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10457320	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484301	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10872154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153674	1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153691	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11754735	0.90[AFR][1000 genomes]
rs11758156	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192219	0.82[AMR][1000 genomes]
rs12193035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12194014	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196716	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12196946	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12197399	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202157	0.85[AFR][1000 genomes]
rs12202612	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12205852	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12208894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209222	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209476	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12209927	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210860	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12215701	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12374604	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17637404	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17818735	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2134088	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41291926	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56020204	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72965600	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72967203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72967214	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72967253	0.96[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs916305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs929059	0.81[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320605	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9481727	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9489220	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9688605	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9766117	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9766656	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9766959	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9767675	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117924600-117928200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr6:117924600-117928400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr6:117924600-117933200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:117924800-117928800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:117925000-117934600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:117926800-117928400	Weak transcription	GM12878-XiMat	blood
7	chr6:117926800-117929200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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