Variant report

Variant	rs9767053
Chromosome Location	chr6:77965023-77965024
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10943431	0.85[AMR][1000 genomes]
rs10943435	0.81[AMR][1000 genomes]
rs13190810	0.85[AMR][1000 genomes]
rs13220732	0.85[AMR][1000 genomes]
rs13220843	0.85[AMR][1000 genomes]
rs2000223	0.82[AMR][1000 genomes]
rs2153888	0.82[AMR][1000 genomes]
rs28860022	0.85[AMR][1000 genomes]
rs4329077	0.82[AMR][1000 genomes]
rs4469255	0.82[AMR][1000 genomes]
rs4551143	0.82[AMR][1000 genomes]
rs6914286	0.81[AMR][1000 genomes]
rs6934089	0.83[AMR][1000 genomes]
rs6934611	0.81[AMR][1000 genomes]
rs9294068	0.82[AMR][1000 genomes]
rs9294069	0.82[AMR][1000 genomes]
rs9443371	0.82[AMR][1000 genomes]
rs9443372	0.82[AMR][1000 genomes]
rs9443377	0.82[AMR][1000 genomes]
rs9443381	0.87[AMR][1000 genomes]
rs9448013	0.82[AMR][1000 genomes]
rs9448017	0.82[AMR][1000 genomes]
rs9448018	0.81[AMR][1000 genomes]
rs9448020	0.86[AMR][1000 genomes]
rs9448025	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9448028	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9448032	0.81[AMR][1000 genomes]
rs9448042	0.85[AMR][1000 genomes]
rs9448043	0.82[AMR][1000 genomes]
rs9448044	0.82[AMR][1000 genomes]
rs9448045	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017082	chr6:77585310-78258237	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534282	chr6:77764575-78351994	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1034979	chr6:77781244-78426249	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538324	chr6:77781244-78426249	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2753543	chr6:77791848-78059351	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1015307	chr6:77902559-78352291	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77959800-77974600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:77962000-77968000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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