Variant report
Variant | rs9767716 |
---|---|
Chromosome Location | chr6:20228298-20228299 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:4 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr6:20213363..20215491-chr6:20226675..20228588,2 | MCF-7 | breast: | |
2 | chr6:20220736..20222285-chr6:20225586..20228558,2 | MCF-7 | breast: | |
3 | chr6:20227262..20229694-chr6:20256912..20259182,2 | K562 | blood: | |
4 | chr6:20211929..20216104-chr6:20227975..20231920,3 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000172197 | Chromatin interaction |
ENSG00000227803 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs2328392 | 0.83[EUR][1000 genomes] |
rs28435633 | 0.83[EUR][1000 genomes] |
rs61111889 | 0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs61737148 | 0.83[EUR][1000 genomes] |
rs6903518 | 0.83[EUR][1000 genomes] |
rs6907839 | 0.83[EUR][1000 genomes] |
rs9465658 | 0.83[EUR][1000 genomes] |
rs9767715 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1029729 | chr6:20113226-20235122 | Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
2 | nsv538155 | chr6:20113226-20235122 | Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
3 | nsv1027355 | chr6:20207893-20261048 | Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
4 | nsv1027220 | chr6:20213667-20258103 | Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
5 | nsv1028657 | chr6:20215081-20258103 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:20222200-20233400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |