Variant report

Variant	rs9770407
Chromosome Location	chr1:33757641-33757642
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:33753046..33756702-chr1:33757010..33761425,4	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10260135	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11760666	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12667817	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13228944	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13228946	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1369096	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17137127	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17137867	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17139468	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1821456	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1821457	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1836270	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1836271	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1836272	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1972856	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1982117	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2164108	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4259295	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4717175	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4718006	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6460119	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6943091	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6949540	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6950116	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6952312	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6972979	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7780402	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7785895	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7789983	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7798133	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7800675	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7804572	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9654757	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755983	chr1:33421507-33858807	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv461050	chr1:33719642-33820134	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv545963	chr1:33719642-33820134	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv522364	chr1:33732192-33832933	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:33725000-33764600	Weak transcription	Fetal Brain Male	brain
2	chr1:33725000-33771800	Weak transcription	A549	lung
3	chr1:33733400-33766600	Weak transcription	HMEC	breast
4	chr1:33733600-33770000	Weak transcription	NHEK	skin
5	chr1:33734400-33766400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:33737000-33772400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr1:33739800-33761000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:33745800-33760800	Weak transcription	GM12878-XiMat	blood
9	chr1:33747400-33769200	Weak transcription	Small Intestine	intestine
10	chr1:33747600-33759000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:33747600-33760800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr1:33747600-33764000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr1:33747600-33765800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr1:33747800-33758400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr1:33747800-33759200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr1:33747800-33759400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:33747800-33759400	Weak transcription	Esophagus	oesophagus
18	chr1:33747800-33760800	Weak transcription	NHLF	lung
19	chr1:33747800-33761000	Weak transcription	Stomach Mucosa	stomach
20	chr1:33747800-33763600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr1:33748000-33761400	Weak transcription	NHDF-Ad	bronchial
22	chr1:33748200-33760800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr1:33749200-33761600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr1:33749400-33758400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr1:33749400-33758400	Weak transcription	Colon Smooth Muscle	Colon
26	chr1:33750800-33760800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr1:33750800-33761400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr1:33750800-33761400	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr1:33751000-33759200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr1:33751200-33761000	Weak transcription	NH-A	brain
31	chr1:33752800-33758400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr1:33752800-33758600	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr1:33752800-33759200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr1:33753000-33758400	Weak transcription	Pancreas	Pancrea
35	chr1:33753200-33758400	Weak transcription	Brain Substantia Nigra	brain
36	chr1:33753200-33760800	Weak transcription	HUVEC	blood vessel
37	chr1:33753400-33758400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr1:33753400-33759000	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr1:33753400-33759200	Weak transcription	Fetal Kidney	kidney
40	chr1:33753400-33760800	Weak transcription	Brain Angular Gyrus	brain
41	chr1:33753600-33758600	Weak transcription	HepG2	liver
42	chr1:33753600-33758800	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr1:33753800-33761400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr1:33754000-33758600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr1:33754600-33758400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr1:33755200-33758400	Weak transcription	Right Atrium	heart
47	chr1:33755200-33758600	Weak transcription	Primary hematopoietic stem cells	blood
48	chr1:33755200-33758600	Weak transcription	Aorta	Aorta
49	chr1:33755200-33760200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr1:33755200-33761400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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