Variant report

Variant	rs9771438
Chromosome Location	chr7:116615233-116615234
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116615230..116617091-chr7:116619480..116621250,2	K562	blood:
2	7:116610596-116619447..7:116651084-116657331	H1-hESC	embryonic stem cell:	embryo
3	7:115847372-115857098..7:116610596-116619447	H1-hESC	embryonic stem cell:	embryo
4	7:116610596-116619447..7:117432820-117434816	H1-hESC	embryonic stem cell:	embryo
5	7:116610596-116619447..7:116849860-116864942	H1-hESC	embryonic stem cell:	embryo
6	7:116434729-116454408..7:116610596-116619447	H1-hESC	embryonic stem cell:	embryo
7	7:116610596-116619447..7:116754962-116765597	GM12878	blood:
8	7:116610596-116619447..7:117114628-117119361	H1-hESC	embryonic stem cell:	embryo
9	7:115861595-115870968..7:116610596-116619447	GM12878	blood:

No data

Variant related genes	Relation type
ENSG00000135269	Chromatin interaction
ENSG00000198898	Chromatin interaction
ENSG00000077063	Chromatin interaction
ENSG00000001626	Chromatin interaction
ENSG00000004866	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs61496700	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73472897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73472900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73473262	0.88[AFR][1000 genomes]
rs73473268	0.88[AFR][1000 genomes]
rs7776604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7782644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7789152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831107	chr7:116414734-116649466	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv981571	chr7:116608949-116617079	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116595200-116621600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:116595600-116617200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:116596400-116616600	Weak transcription	Osteobl	bone
4	chr7:116596400-116622200	Weak transcription	Fetal Intestine Large	intestine
5	chr7:116596600-116617400	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:116596800-116617200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:116597000-116641600	Weak transcription	Ovary	ovary
8	chr7:116598400-116617600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:116598800-116630400	Weak transcription	Aorta	Aorta
10	chr7:116600600-116620200	Weak transcription	Lung	lung
11	chr7:116603400-116617800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr7:116607600-116618000	Weak transcription	Spleen	Spleen
13	chr7:116607600-116622200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr7:116607600-116632400	Weak transcription	Gastric	stomach
15	chr7:116608800-116617400	Weak transcription	HSMMtube	muscle
16	chr7:116609000-116627400	Weak transcription	Placenta	Placenta
17	chr7:116609800-116618000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr7:116610600-116618200	Weak transcription	Stomach Mucosa	stomach
19	chr7:116610600-116638800	Weak transcription	Hela-S3	cervix
20	chr7:116610800-116616600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr7:116610800-116617400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:116610800-116617400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr7:116610800-116617400	Weak transcription	HUVEC	blood vessel
24	chr7:116610800-116618000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr7:116610800-116626800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr7:116611000-116619400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr7:116611000-116621400	Weak transcription	Fetal Heart	heart
28	chr7:116611200-116616600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr7:116611200-116617200	Weak transcription	NHEK	skin
30	chr7:116611200-116618200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr7:116611600-116615400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr7:116611600-116616600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr7:116612000-116632000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr7:116612200-116623400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr7:116612200-116628800	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr7:116612800-116615800	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr7:116612800-116623600	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr7:116613000-116616000	Weak transcription	Fetal Stomach	stomach
39	chr7:116613000-116617400	Weak transcription	K562	blood
40	chr7:116613000-116623400	Weak transcription	Left Ventricle	heart
41	chr7:116613600-116635600	Weak transcription	Pancreas	Pancrea
42	chr7:116613600-116647000	Weak transcription	Right Atrium	heart
43	chr7:116615200-116615600	ZNF genes & repeats	Fetal Intestine Small	intestine
44	chr7:116615200-116621600	Weak transcription	GM12878-XiMat	blood

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