Variant report

Variant	rs9775566
Chromosome Location	chr9:21819722-21819723
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:21811237..21820561-chr9:21988636..21997115,18	MCF-7	breast:
2	chr9:21811828..21813353-chr9:21817709..21820249,2	MCF-7	breast:
3	chr9:21811532..21820564-chr9:21988281..21997291,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147889	Chromatin interaction
ENSG00000266446	Chromatin interaction
ENSG00000229298	Chromatin interaction
ENSG00000240498	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9722004	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21804000-21838200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:21806400-21819800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
3	chr9:21806600-21841200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:21809200-21836800	Weak transcription	Small Intestine	intestine
5	chr9:21814000-21831800	Weak transcription	Fetal Heart	heart
6	chr9:21814400-21831800	Weak transcription	Stomach Mucosa	stomach
7	chr9:21814400-21837400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr9:21814400-21845200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr9:21814800-21819800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:21814800-21820000	Strong transcription	H1 Cell Line	embryonic stem cell
11	chr9:21814800-21820000	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr9:21814800-21820400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:21815000-21819800	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr9:21815600-21819800	Strong transcription	Brain Anterior Caudate	brain
15	chr9:21815600-21819800	Strong transcription	Fetal Muscle Leg	muscle
16	chr9:21815600-21819800	Strong transcription	Ovary	ovary
17	chr9:21815600-21819800	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr9:21815600-21820000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
19	chr9:21815600-21820000	Strong transcription	Fetal Thymus	thymus
20	chr9:21815600-21821200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr9:21815600-21821200	Strong transcription	Fetal Intestine Large	intestine
22	chr9:21815800-21819800	Strong transcription	Stomach Smooth Muscle	stomach
23	chr9:21815800-21820000	Strong transcription	Fetal Muscle Trunk	muscle
24	chr9:21815800-21821200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:21816400-21836600	Weak transcription	Psoas Muscle	Psoas
26	chr9:21816600-21833800	Weak transcription	Fetal Brain Male	brain
27	chr9:21816800-21833200	Weak transcription	Brain Angular Gyrus	brain
28	chr9:21817400-21820600	Strong transcription	Liver	Liver
29	chr9:21817400-21829000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr9:21817400-21830200	Weak transcription	Colon Smooth Muscle	Colon
31	chr9:21817400-21837800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr9:21817600-21820000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr9:21817800-21819800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:21817800-21819800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr9:21817800-21819800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr9:21817800-21820000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr9:21817800-21820000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr9:21817800-21821200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr9:21817800-21840600	Weak transcription	Colonic Mucosa	Colon
40	chr9:21818000-21819800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
41	chr9:21818000-21820000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr9:21818200-21819800	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr9:21818200-21821200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr9:21818400-21824200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr9:21818400-21824400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr9:21818400-21824400	Weak transcription	Aorta	Aorta
47	chr9:21818400-21824600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr9:21818600-21819800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr9:21818600-21824400	Weak transcription	Esophagus	oesophagus
50	chr9:21818600-21824400	Weak transcription	Pancreas	Pancrea

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