Variant report

Variant	rs977769
Chromosome Location	chr16:82346406-82346407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs13331162	0.86[EUR][1000 genomes]
rs13331990	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13336423	0.90[EUR][1000 genomes]
rs13336467	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13337515	0.94[EUR][1000 genomes]
rs13337698	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2906801	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2906804	0.94[ASN][1000 genomes]
rs2906805	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2906806	0.89[ASN][1000 genomes]
rs2906808	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2932830	0.82[ASN][1000 genomes]
rs2932831	0.89[ASN][1000 genomes]
rs2967411	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2967417	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2967418	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2967421	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3887923	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4503786	0.82[ASN][1000 genomes]
rs55807838	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56174352	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58226947	0.84[EUR][1000 genomes]
rs59325078	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61687651	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62038305	0.83[ASN][1000 genomes]
rs62038310	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62038311	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62038313	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62038316	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62038317	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62038318	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62038319	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62038320	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62038321	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62038322	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62038324	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs66726226	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7190770	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7197429	0.83[EUR][1000 genomes]
rs732757	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs745256	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs977768	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9926445	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9932426	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9935462	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9937707	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv833302	chr16:82188351-82363863	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv1844598	chr16:82195234-82429790	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	esv1847414	chr16:82195234-82429790	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv1065896	chr16:82213517-82731994	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
8	nsv833304	chr16:82306875-82429021	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82345400-82350600	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links