Variant report

Variant	rs978142
Chromosome Location	chr3:25228989-25228990
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs2043619	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2043620	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2363595	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2649616	0.82[ASN][1000 genomes]
rs2885836	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs321521	0.82[ASN][1000 genomes]
rs321524	0.82[ASN][1000 genomes]
rs321525	0.82[ASN][1000 genomes]
rs321534	0.83[AFR][1000 genomes]
rs321536	0.81[AFR][1000 genomes]
rs321539	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs321540	0.82[ASN][1000 genomes]
rs321542	0.89[YRI][hapmap];0.89[AFR][1000 genomes]
rs4258924	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6550953	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6793141	0.82[ASN][1000 genomes]
rs6796899	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73054320	0.90[AFR][1000 genomes]
rs904593	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876631	chr3:25185448-25231571	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
3	nsv508213	chr3:25206150-25326196	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25225200-25229000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:25228600-25229000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr3:25228600-25229000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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